Author: tille
Date: 2014-04-14 20:50:46 +0000 (Mon, 14 Apr 2014)
New Revision: 16703
Modified:
trunk/packages/staden-io-lib/trunk/debian/rules
trunk/packages/staden-io-lib/trunk/debian/tests/run-unit-test
Log:
Fix autopkgtest
Modified: trunk/packages/staden-io-lib/trunk/debian/rules
===================================================================
--- trunk/packages/staden-io-lib/trunk/debian/rules 2014-04-14 15:58:57 UTC
(rev 16702)
+++ trunk/packages/staden-io-lib/trunk/debian/rules 2014-04-14 20:50:46 UTC
(rev 16703)
@@ -34,7 +34,7 @@
mkdir -p $(testdir)
# fix path to staden-io-lib executable in examples
for tst in `ls tests/*.test` ; do \
- sed 's#$$top_builddir/progs/#/usr/bin/#' $${tst} >
$(testdir)/`basename $${tst}` ; \
+ sed -e 's#\.\./$$top_builddir/progs/#/usr/bin/#' -e
's#$$top_builddir/progs/#/usr/bin/#' $${tst} > $(testdir)/`basename $${tst}` ; \
done
# remove autogenerated big data files
rm -f $(testdir)/data/ce\#*sorted.sam
Modified: trunk/packages/staden-io-lib/trunk/debian/tests/run-unit-test
===================================================================
--- trunk/packages/staden-io-lib/trunk/debian/tests/run-unit-test
2014-04-14 15:58:57 UTC (rev 16702)
+++ trunk/packages/staden-io-lib/trunk/debian/tests/run-unit-test
2014-04-14 20:50:46 UTC (rev 16703)
@@ -7,12 +7,23 @@
cp -a /usr/share/doc/staden-io-lib/test/* $ADTTMP
gunzip data/*.gz
-TESTS=`ls *.test`
+#TESTS=`ls *.test`
+# The sequence of the tests plays some role to finish all of them successfully
+TESTS="srf2fasta.test
+ srf2fastq.test
+ srf_filter.test
+ srf_info.test
+ srf_index.test
+ scram.test
+ scram_mt.test
+ "
+
OUTDIR=./test.out
LOGFILE=`basename $0`.log
mkdir -p $OUTDIR
for tst in $TESTS ; do
- srcdir=. outdir=$OUTDIR $tst > $LOGFILE
+ echo $tst >> $LOGFILE
+ srcdir=. outdir=$OUTDIR $tst 2>&1 | tee >> $LOGFILE
done
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