This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository varscan.
commit fbaf3e40a5903ac7b64e88742a37da78bb3a0b14 Author: Andreas Tille <[email protected]> Date: Thu Apr 17 10:18:28 2014 +0200 Get some basic package --- debian/{manifest => __manifest__} | 6 +++--- debian/bin/varscan | 3 +++ debian/control | 8 ++++++-- debian/install | 1 + debian/jlibs | 1 + debian/rules | 22 ++++++---------------- 6 files changed, 20 insertions(+), 21 deletions(-) diff --git a/debian/manifest b/debian/__manifest__ similarity index 95% rename from debian/manifest rename to debian/__manifest__ index 416f0ea..86bb3ad 100644 --- a/debian/manifest +++ b/debian/__manifest__ @@ -1,3 +1,3 @@ -Manifest-Version: 1.0 -Main-Class: net.sf.varscan.VarScan - +Manifest-Version: 1.0 +Main-Class: net.sf.varscan.VarScan + diff --git a/debian/bin/varscan b/debian/bin/varscan new file mode 100755 index 0000000..2aefcd3 --- /dev/null +++ b/debian/bin/varscan @@ -0,0 +1,3 @@ +#!/bin/bash + +java $JAVA_OPTS -jar /usr/share/java/`basename $0`.jar $@ diff --git a/debian/control b/debian/control index 8b244ee..971b0a8 100644 --- a/debian/control +++ b/debian/control @@ -3,7 +3,10 @@ Section: science Priority: optional Maintainer: Debian Med Packaging Team <[email protected]> Uploaders: Andreas Tille <[email protected]> -Build-Depends: debhelper (>= 9) +Build-Depends: debhelper (>= 9), + javahelper (>=0.25), + default-jdk, + ant Standards-Version: 3.9.5 Vcs-Browser: http://anonscm.debian.org/gitweb/?p=debian-med/varscan.git Vcs-Git: git://anonscm.debian.org/debian-med/varscan.git @@ -11,7 +14,8 @@ Homepage: http://varscan.sourceforge.net/ Package: varscan Architecture: any -Depends: ${shlibs:Depends}, ${misc:Depends} +Depends: ${misc:Depends}, + ${java:Depends} Description: variant detection in next-generation sequencing data Variant detection in massively parallel sequencing. For one sample, calls SNPs, indels, and consensus genotypes. For tumor-normal pairs, diff --git a/debian/install b/debian/install new file mode 100644 index 0000000..8e71dae --- /dev/null +++ b/debian/install @@ -0,0 +1 @@ +debian/bin usr diff --git a/debian/jlibs b/debian/jlibs new file mode 100644 index 0000000..0ef7c6d --- /dev/null +++ b/debian/jlibs @@ -0,0 +1 @@ +dist/*.jar diff --git a/debian/rules b/debian/rules index 58ec00b..6712aa4 100755 --- a/debian/rules +++ b/debian/rules @@ -2,22 +2,12 @@ # DH_VERBOSE := 1 -# some helpful variables - uncomment them if needed -# shamelessly stolen from http://jmtd.net/log/awk/ -#DEBVERS := $(shell dpkg-parsechangelog | awk '/^Version:/ {print $$2}') -#VERSION := $(shell echo '$(DEBVERS)' | sed -e 's/^[0-9]*://' -e 's/-.*//') -#DEBFLAVOR := $(shell dpkg-parsechangelog | awk '/^Distribution:/ {print $$2}') -#DEBPKGNAME := $(shell dpkg-parsechangelog | awk '/^Source:/ {print $$2}') -#DEBIAN_BRANCH := $(shell awk 'BEGIN{FS="[= ]+"} /debian-branch/ {print $$2}' debian/gbp.conf) -#GIT_TAG := $(subst ~,_,$(VERSION)) +export JAVA_HOME=/usr/lib/jvm/default-java -# alternatively to manually set those variables you can -# include /usr/share/cdbs/1/rules/buildvars.mk -# and use what is set there. Any hint whether dh might set variables in -# a similar manner are welcome. +override_dh_auto_build: + cp debian/build.xml build.xml + dh_auto_build + rm -f build.xml %: - dh $@ - -#get-orig-source: -# . debian/get-orig-source + dh $@ --with javahelper -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/varscan.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
