Author: tille Date: 2014-06-08 08:15:45 +0000 (Sun, 08 Jun 2014) New Revision: 17061
Added: trunk/packages/python-biopython/trunk/debian/patches/fix_cpairwise2_import_issue.patch Modified: trunk/packages/python-biopython/trunk/debian/changelog trunk/packages/python-biopython/trunk/debian/patches/series Log: Commit latest change: Apply upstream fix to fix cpairwise2 import issue under python3 Modified: trunk/packages/python-biopython/trunk/debian/changelog =================================================================== --- trunk/packages/python-biopython/trunk/debian/changelog 2014-06-07 09:28:22 UTC (rev 17060) +++ trunk/packages/python-biopython/trunk/debian/changelog 2014-06-08 08:15:45 UTC (rev 17061) @@ -1,3 +1,10 @@ +python-biopython (1.63+dfsg-5) unstable; urgency=medium + + * Apply upstream fix to fix cpairwise2 import issue under python3 + Closes: #747494 + + -- Andreas Tille <[email protected]> Sat, 10 May 2014 07:52:48 +0200 + python-biopython (1.63+dfsg-4) unstable; urgency=medium [ Martin Pitt ] Added: trunk/packages/python-biopython/trunk/debian/patches/fix_cpairwise2_import_issue.patch =================================================================== --- trunk/packages/python-biopython/trunk/debian/patches/fix_cpairwise2_import_issue.patch (rev 0) +++ trunk/packages/python-biopython/trunk/debian/patches/fix_cpairwise2_import_issue.patch 2014-06-08 08:15:45 UTC (rev 17061) @@ -0,0 +1,18 @@ +Author: Peter Cock <[email protected]> +Last-Update: Fri, 9 May 2014 13:36:32 +0100 +Bugs-Debian: http://bugs.debian.org/747494 +Bugs-Upstream: https://github.com/biopython/biopython/pull/299 +Description: fix cpairwise2 import issue under python3 + see https://github.com/biopython/biopython/commit/daf3e3b5ba317fbbea1f7eebae3c5f8b06a40d6b + +--- a/Bio/pairwise2.py ++++ b/Bio/pairwise2.py +@@ -878,7 +878,7 @@ def format_alignment(align1, align2, sco + # Try and load C implementations of functions. If I can't, + # then just ignore and use the pure python implementations. + try: +- from cpairwise2 import rint, _make_score_matrix_fast ++ from .cpairwise2 import rint, _make_score_matrix_fast + except ImportError: + pass + Modified: trunk/packages/python-biopython/trunk/debian/patches/series =================================================================== --- trunk/packages/python-biopython/trunk/debian/patches/series 2014-06-07 09:28:22 UTC (rev 17060) +++ trunk/packages/python-biopython/trunk/debian/patches/series 2014-06-08 08:15:45 UTC (rev 17061) @@ -3,3 +3,4 @@ use_upstream_patch_for_bwa_test.patch biopython-from-pil-import-image.patch remove_mathml-qname.patch +fix_cpairwise2_import_issue.patch _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
