Author: tille Date: 2014-06-08 15:51:00 +0000 (Sun, 08 Jun 2014) New Revision: 17078
Removed: trunk/packages/R/r-bioc-annotationdbi/trunk/debian/tests/ Modified: trunk/packages/R/r-bioc-annotationdbi/trunk/debian/README.test trunk/packages/R/r-bioc-annotationdbi/trunk/debian/changelog trunk/packages/R/r-bioc-annotationdbi/trunk/debian/control Log: New upstream version; Deactivate autopkgtest again since large database packages would be needed and creating these only for the purpose of testing is not very effective Modified: trunk/packages/R/r-bioc-annotationdbi/trunk/debian/README.test =================================================================== --- trunk/packages/R/r-bioc-annotationdbi/trunk/debian/README.test 2014-06-08 14:41:38 UTC (rev 17077) +++ trunk/packages/R/r-bioc-annotationdbi/trunk/debian/README.test 2014-06-08 15:51:00 UTC (rev 17078) @@ -8,4 +8,21 @@ AnnotationDbi:::.test() EOT -in order to confirm its integrity. +in order to confirm its integrity. However, to successfully run this +testsuite you need to install several BioConductor databases. There is +some preparation to package these done at the following locations: + + svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-reactome.db/trunk/ + svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-hgu95av2.db/trunk/ + svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-hom.hs.inp.db/trunk/ + svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-org.tguttatatestingsubset.eg.db/trunk/ + svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-org.at.tair.db/trunk/ + svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-org.sc.sgd.db/trunk/ + svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-go.db/trunk/ + +You might like to decide whether you want to create these packages yourself +locally or find any other means to install the relevant databases to run +the test suite. It was decided that creating Debian packages of large size +just to run the test suite is not very sensible. + + -- Andreas Tille <[email protected]> Sun, 08 Jun 2014 17:46:30 +0200 Modified: trunk/packages/R/r-bioc-annotationdbi/trunk/debian/changelog =================================================================== --- trunk/packages/R/r-bioc-annotationdbi/trunk/debian/changelog 2014-06-08 14:41:38 UTC (rev 17077) +++ trunk/packages/R/r-bioc-annotationdbi/trunk/debian/changelog 2014-06-08 15:51:00 UTC (rev 17078) @@ -1,21 +1,13 @@ -r-bioc-annotationdbi (1.24.0-2) UNRELEASED; urgency=medium +r-bioc-annotationdbi (1.26.0-1) UNRELEASED; urgency=medium - [ Martin Pitt ] - * debian/tests/control: Add missing r-cran-runit test dependency, and allow - stderr output. + * New upstream version + * Deactivate autopkgtest again since large database packages would + be needed and creating these only for the purpose of testing is + not very effective + Closes: #735547 - [ Andreas Tille ] - * TODO: Create packages of some BioC databases: - svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-reactome.db/trunk/ - svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-hgu95av2.db/trunk/ - svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-hom.hs.inp.db/trunk/ - svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-org.tguttatatestingsubset.eg.db/trunk/ - svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-org.at.tair.db/trunk/ - svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-org.sc.sgd.db/trunk/ - svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-go.db/trunk/ + -- Andreas Tille <[email protected]> Sun, 08 Jun 2014 17:46:30 +0200 - -- Andreas Tille <[email protected]> Thu, 16 Jan 2014 14:07:52 +0100 - r-bioc-annotationdbi (1.24.0-1) unstable; urgency=medium * New upstream version Modified: trunk/packages/R/r-bioc-annotationdbi/trunk/debian/control =================================================================== --- trunk/packages/R/r-bioc-annotationdbi/trunk/debian/control 2014-06-08 14:41:38 UTC (rev 17077) +++ trunk/packages/R/r-bioc-annotationdbi/trunk/debian/control 2014-06-08 15:51:00 UTC (rev 17078) @@ -2,7 +2,6 @@ Maintainer: Debian Med Packaging Team <[email protected]> Uploaders: Andreas Tille <[email protected]> Section: gnu-r -XS-Testsuite: autopkgtest Priority: optional Build-Depends: debhelper (>= 9), cdbs, _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
