Author: tille Date: 2014-06-10 07:31:09 +0000 (Tue, 10 Jun 2014) New Revision: 17100
Added: trunk/packages/R/r-bioc-biostrings/trunk/debian/patches/ trunk/packages/R/r-bioc-biostrings/trunk/debian/patches/series trunk/packages/R/r-bioc-biostrings/trunk/debian/patches/use_debian_packaged_zlib.patch Modified: trunk/packages/R/r-bioc-biostrings/trunk/debian/changelog trunk/packages/R/r-bioc-biostrings/trunk/debian/control Log: Patch to use Debian packaged zlib; can not be uplaoded yet, needs more recent version of r-bioc-xvector Modified: trunk/packages/R/r-bioc-biostrings/trunk/debian/changelog =================================================================== --- trunk/packages/R/r-bioc-biostrings/trunk/debian/changelog 2014-06-10 07:06:22 UTC (rev 17099) +++ trunk/packages/R/r-bioc-biostrings/trunk/debian/changelog 2014-06-10 07:31:09 UTC (rev 17100) @@ -1,3 +1,10 @@ +r-bioc-biostrings (2.32.0-1) UNRELEASED; urgency=medium + + * New upstream version + * Patch to use Debian packaged zlib + + -- Andreas Tille <[email protected]> Tue, 10 Jun 2014 09:25:24 +0200 + r-bioc-biostrings (2.30.1-1) unstable; urgency=low * New upstream version Modified: trunk/packages/R/r-bioc-biostrings/trunk/debian/control =================================================================== --- trunk/packages/R/r-bioc-biostrings/trunk/debian/control 2014-06-10 07:06:22 UTC (rev 17099) +++ trunk/packages/R/r-bioc-biostrings/trunk/debian/control 2014-06-10 07:31:09 UTC (rev 17100) @@ -8,7 +8,7 @@ r-base-dev, r-bioc-iranges, r-bioc-xvector -Standards-Version: 3.9.4 +Standards-Version: 3.9.5 Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-biostrings/trunk/ Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-biostrings/trunk/ Homepage: http://bioconductor.org/packages/release/bioc/html/Biostrings.html @@ -24,4 +24,3 @@ Memory efficient string containers, string matching algorithms, and other utilities, for fast manipulation of large biological sequences or set of sequences. - Added: trunk/packages/R/r-bioc-biostrings/trunk/debian/patches/series =================================================================== --- trunk/packages/R/r-bioc-biostrings/trunk/debian/patches/series (rev 0) +++ trunk/packages/R/r-bioc-biostrings/trunk/debian/patches/series 2014-06-10 07:31:09 UTC (rev 17100) @@ -0,0 +1 @@ +use_debian_packaged_zlib.patch Added: trunk/packages/R/r-bioc-biostrings/trunk/debian/patches/use_debian_packaged_zlib.patch =================================================================== --- trunk/packages/R/r-bioc-biostrings/trunk/debian/patches/use_debian_packaged_zlib.patch (rev 0) +++ trunk/packages/R/r-bioc-biostrings/trunk/debian/patches/use_debian_packaged_zlib.patch 2014-06-10 07:31:09 UTC (rev 17100) @@ -0,0 +1,21 @@ +--- a/DESCRIPTION ++++ b/DESCRIPTION +@@ -12,7 +12,7 @@ biocViews: SequenceMatching, Genetics, S + Depends: R (>= 2.8.0), methods, BiocGenerics (>= 0.5.4), IRanges (>= + 1.21.35), XVector (>= 0.3.6) + Imports: graphics, methods, stats, utils, BiocGenerics, IRanges, +- XVector, zlibbioc ++ XVector + LinkingTo: IRanges, XVector + Enhances: Rmpi + Suggests: BSgenome (>= 1.13.14), BSgenome.Celegans.UCSC.ce2 (>= +--- a/NAMESPACE ++++ b/NAMESPACE +@@ -19,7 +19,6 @@ importFrom(utils, + import(BiocGenerics) + import(IRanges) + import(XVector) +-import(zlibbioc) + + + ### ========================================================================== _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
