Author: tille Date: 2014-08-07 10:58:22 +0000 (Thu, 07 Aug 2014) New Revision: 17627
Added: trunk/packages/ngsqctoolkit/ trunk/packages/ngsqctoolkit/trunk/ trunk/packages/ngsqctoolkit/trunk/debian/ trunk/packages/ngsqctoolkit/trunk/debian/changelog trunk/packages/ngsqctoolkit/trunk/debian/compat trunk/packages/ngsqctoolkit/trunk/debian/control trunk/packages/ngsqctoolkit/trunk/debian/copyright trunk/packages/ngsqctoolkit/trunk/debian/rules trunk/packages/ngsqctoolkit/trunk/debian/source/ trunk/packages/ngsqctoolkit/trunk/debian/source/format trunk/packages/ngsqctoolkit/trunk/debian/upstream/ trunk/packages/ngsqctoolkit/trunk/debian/upstream/metadata trunk/packages/ngsqctoolkit/trunk/debian/watch Log: Inject some rough packaging stuff for ngsqctoolkit (does not yet build a package - license needs to be clarified first) Added: trunk/packages/ngsqctoolkit/trunk/debian/changelog =================================================================== --- trunk/packages/ngsqctoolkit/trunk/debian/changelog (rev 0) +++ trunk/packages/ngsqctoolkit/trunk/debian/changelog 2014-08-07 10:58:22 UTC (rev 17627) @@ -0,0 +1,5 @@ +ngsqctoolkit (2.3.3-1) UNRELEASED; urgency=low + + * Initial release (Closes: #<bug>) + + -- DMPT <[email protected]> Thu, 24 May 2012 14:30:13 +0200 Added: trunk/packages/ngsqctoolkit/trunk/debian/compat =================================================================== --- trunk/packages/ngsqctoolkit/trunk/debian/compat (rev 0) +++ trunk/packages/ngsqctoolkit/trunk/debian/compat 2014-08-07 10:58:22 UTC (rev 17627) @@ -0,0 +1 @@ +9 Added: trunk/packages/ngsqctoolkit/trunk/debian/control =================================================================== --- trunk/packages/ngsqctoolkit/trunk/debian/control (rev 0) +++ trunk/packages/ngsqctoolkit/trunk/debian/control 2014-08-07 10:58:22 UTC (rev 17627) @@ -0,0 +1,22 @@ +Source: ngsqctoolkit +Section: science +Priority: optional +Maintainer: Debian Med Packaging Team <[email protected]> +Uploaders: Andreas Tille <[email protected]> +Build-Depends: debhelper (>= 9) +Standards-Version: 3.9.5 +Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/ngsqctoolkit/trunk/ +Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/ngsqctoolkit/trunk/ +Homepage: http://59.163.192.90:8080/ngsqctoolkit/ + +Package: ngsqctoolkit +Architecture: any +Depends: ${shlibs:Depends}, ${misc:Depends} +Description: toolkit for the quality control of next generation sequencing data + NGS QC Toolkit: A toolkit for the quality control (QC) of next + generation sequencing (NGS) data. The toolkit comprises of user-friendly + stand alone tools for quality control of the sequence data generated + using Illumina and Roche 454 platforms with detailed results in the form + of tables and graphs, and filtering of high-quality sequence data. It + also includes few other tools, which are helpful in NGS data quality + control and analysis. Added: trunk/packages/ngsqctoolkit/trunk/debian/copyright =================================================================== --- trunk/packages/ngsqctoolkit/trunk/debian/copyright (rev 0) +++ trunk/packages/ngsqctoolkit/trunk/debian/copyright 2014-08-07 10:58:22 UTC (rev 17627) @@ -0,0 +1,12 @@ +Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Upstream-Name: NGS QC Toolkit +Upstream-Contact: Mukesh Jain <[email protected]> ([email protected]) +Source: http://59.163.192.90:8080/ngsqctoolkit/ + +Files: * +Copyright: © 2010-2014 Mukesh Jain +License: to_be_clarified + +Files: debian/* +Copyright: © 2014 maintainername <[email protected]> +License: <license> Added: trunk/packages/ngsqctoolkit/trunk/debian/rules =================================================================== --- trunk/packages/ngsqctoolkit/trunk/debian/rules (rev 0) +++ trunk/packages/ngsqctoolkit/trunk/debian/rules 2014-08-07 10:58:22 UTC (rev 17627) @@ -0,0 +1,23 @@ +#!/usr/bin/make -f + +# DH_VERBOSE := 1 + +# some helpful variables - uncomment them if needed +# shamelessly stolen from http://jmtd.net/log/awk/ +#DEBVERS := $(shell dpkg-parsechangelog | awk '/^Version:/ {print $$2}') +#VERSION := $(shell echo '$(DEBVERS)' | sed -e 's/^[0-9]*://' -e 's/-.*//') +#DEBFLAVOR := $(shell dpkg-parsechangelog | awk '/^Distribution:/ {print $$2}') +#DEBPKGNAME := $(shell dpkg-parsechangelog | awk '/^Source:/ {print $$2}') +#DEBIAN_BRANCH := $(shell awk 'BEGIN{FS="[= ]+"} /debian-branch/ {print $$2}' debian/gbp.conf) +#GIT_TAG := $(subst ~,_,$(VERSION)) + +# alternatively to manually set those variables you can +# include /usr/share/cdbs/1/rules/buildvars.mk +# and use what is set there. Any hint whether dh might set variables in +# a similar manner are welcome. + +%: + dh $@ + +#get-orig-source: +# . debian/get-orig-source Property changes on: trunk/packages/ngsqctoolkit/trunk/debian/rules ___________________________________________________________________ Added: svn:executable + * Added: trunk/packages/ngsqctoolkit/trunk/debian/source/format =================================================================== --- trunk/packages/ngsqctoolkit/trunk/debian/source/format (rev 0) +++ trunk/packages/ngsqctoolkit/trunk/debian/source/format 2014-08-07 10:58:22 UTC (rev 17627) @@ -0,0 +1 @@ +3.0 (quilt) Added: trunk/packages/ngsqctoolkit/trunk/debian/upstream/metadata =================================================================== --- trunk/packages/ngsqctoolkit/trunk/debian/upstream/metadata (rev 0) +++ trunk/packages/ngsqctoolkit/trunk/debian/upstream/metadata 2014-08-07 10:58:22 UTC (rev 17627) @@ -0,0 +1,12 @@ +Reference: + Author: Ravi K. Patel and Mukesh Jain + Title: "NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data" + Journal: PLoS One + Year: 2012 + Volume: 7 + Number: 2 + Pages: e30619 + DOI: 10.1371/journal.pone.0030619 + PMID: 22312429 + URL: http://www.plosone.org/article/info:doi/10.1371/journal.pone.0030619 + eprint: http://www.plosone.org/article/fetchObject.action?uri=info%3Adoi%2F10.1371%2Fjournal.pone.0030619&representation=PDF Added: trunk/packages/ngsqctoolkit/trunk/debian/watch =================================================================== --- trunk/packages/ngsqctoolkit/trunk/debian/watch (rev 0) +++ trunk/packages/ngsqctoolkit/trunk/debian/watch 2014-08-07 10:58:22 UTC (rev 17627) @@ -0,0 +1,3 @@ +version=3 + +http://59.163.192.90:8080/ngsqctoolkit/ .*download.pl\?toolkit=NGSQCToolkit_v([\d.]+)\.zip _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
