Author: tille Date: 2014-08-15 10:25:35 +0000 (Fri, 15 Aug 2014) New Revision: 17740
Modified: trunk/packages/python-biopython/trunk/debian/changelog trunk/packages/python-biopython/trunk/debian/control trunk/packages/python-biopython/trunk/debian/rules Log: Try to get the package finally build on all architectures by skiping test on mips architecture which is known to fail and versioned (Build-)Depends wise Modified: trunk/packages/python-biopython/trunk/debian/changelog =================================================================== --- trunk/packages/python-biopython/trunk/debian/changelog 2014-08-15 08:11:47 UTC (rev 17739) +++ trunk/packages/python-biopython/trunk/debian/changelog 2014-08-15 10:25:35 UTC (rev 17740) @@ -1,3 +1,12 @@ +python-biopython (1.64+dfsg-3) unstable; urgency=medium + + * Skip test on mips architecture which is known to fail + * Versioned (Build-)Depends wise (>= 2.4.1-16) to make sure tests + will pass on each architecture (problems with previous wise on + powerpc, s390x) + + -- Andreas Tille <[email protected]> Fri, 15 Aug 2014 11:41:23 +0200 + python-biopython (1.64+dfsg-2) unstable; urgency=medium * Use HOME in build_dir for testing (thanks to Jakub Wilk <[email protected]> Modified: trunk/packages/python-biopython/trunk/debian/control =================================================================== --- trunk/packages/python-biopython/trunk/debian/control 2014-08-15 08:11:47 UTC (rev 17739) +++ trunk/packages/python-biopython/trunk/debian/control 2014-08-15 10:25:35 UTC (rev 17740) @@ -41,7 +41,7 @@ python3-psycopg2, raxml [any-amd64], t-coffee, - wise + wise (>= 2.4.1-16) # python-rdflib (>= 4) # only in experimental # python3-rdflib (>= 4) # only in experimental Standards-Version: 3.9.5 @@ -89,7 +89,7 @@ python3-psycopg2, raxml, t-coffee, - wise + wise (>= 2.4.1-16) # python-rdflib (>= 4) # only in experimental Description: Python library for bioinformatics (implemented in Python 2) The Biopython Project is an international association @@ -145,7 +145,7 @@ python3-psycopg2, raxml, t-coffee, - wise + wise (>= 2.4.1-16) # python3-rdflib (>= 4) # only in experimental Description: Python library for bioinformatics (implemented in Python 3) The Biopython Project is an international association Modified: trunk/packages/python-biopython/trunk/debian/rules =================================================================== --- trunk/packages/python-biopython/trunk/debian/rules 2014-08-15 08:11:47 UTC (rev 17739) +++ trunk/packages/python-biopython/trunk/debian/rules 2014-08-15 10:25:35 UTC (rev 17740) @@ -53,6 +53,16 @@ dh_numpy3 -ppython3-biopython override_dh_auto_test: +ifeq ($(BUILDARCH),mips) + echo "***************************************************************************" + echo "* Attention: Build time tests for mips architecture are skipped. *" + echo "* The reason is that the tests are known to fail for Python3 and the *" + echo "* effort to simply run only for Python 2.7 seems to be error prone. *" + echo "* Upstream is working on a solution so this should be dropped for *" + echo "* next upstream version. See: *" + echo "* http://mailman.open-bio.org/pipermail/biopython/2014-August/015383.html *" + echo "***************************************************************************" +else mkdir -p Tests_avoid if [ "$(EXCLUDERDFLIB)" != "" ] ; then echo "You might like to install python-rdflib from experimental to run Phylo_CDAO test" ; else echo "Phylo_CDAO will be done"; fi for avoid in $(EXCLUDEONLINE) $(EXCLUDENONFREE) $(EXCLUDENOTPACKAGED) $(EXCLUDEARCHamd64) $(EXCLUDEDATABASE) $(EXCLUDERDFLIB) $(EXCLUDEFAILINGTESTS) \ @@ -78,6 +88,7 @@ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME={build_dir}/home {interpreter} run_tests.py --offline' mv Tests_avoid/* Tests rmdir Tests_avoid +endif override_dh_installdocs-indep: dh_installdocs _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
