This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch debian/unstable in repository htslib.
commit b3a60f270071601ddc54f9ec8ab0872c684f7b65 Author: Charles Plessy <[email protected]> Date: Sat Aug 16 18:47:46 2014 +0900 Remove Debian revision from symbols version. --- debian/libhts1.symbols | 1056 ++++++++++++++++++++++++------------------------ 1 file changed, 528 insertions(+), 528 deletions(-) diff --git a/debian/libhts1.symbols b/debian/libhts1.symbols index 10f3518..3651616 100644 --- a/debian/libhts1.symbols +++ b/debian/libhts1.symbols @@ -1,529 +1,529 @@ libhts.so.1 libhts1 #MINVER# - MD5_Final@Base 1.0-1 - MD5_Init@Base 1.0-1 - MD5_Update@Base 1.0-1 - _reader_next_line@Base 1.0-1 - _vcf_parse_format@Base 1.0-1 - bam_aux2A@Base 1.0-1 - bam_aux2Z@Base 1.0-1 - bam_aux2f@Base 1.0-1 - bam_aux2i@Base 1.0-1 - bam_aux_append@Base 1.0-1 - bam_aux_del@Base 1.0-1 - bam_aux_get@Base 1.0-1 - bam_cigar2qlen@Base 1.0-1 - bam_cigar2rlen@Base 1.0-1 - bam_construct_seq@Base 1.0-1 - bam_copy1@Base 1.0-1 - bam_destroy1@Base 1.0-1 - bam_dup1@Base 1.0-1 - bam_endpos@Base 1.0-1 - bam_flag2str@Base 1.0-1 - bam_hdr_destroy@Base 1.0-1 - bam_hdr_dup@Base 1.0-1 - bam_hdr_init@Base 1.0-1 - bam_hdr_read@Base 1.0-1 - bam_hdr_write@Base 1.0-1 - bam_header_to_cram@Base 1.0-1 - bam_index_build@Base 1.0-1 - bam_init1@Base 1.0-1 - bam_mplp_auto@Base 1.0-1 - bam_mplp_destroy@Base 1.0-1 - bam_mplp_init@Base 1.0-1 - bam_mplp_init_overlaps@Base 1.0-1 - bam_mplp_set_maxcnt@Base 1.0-1 - bam_name2id@Base 1.0-1 - bam_plp_auto@Base 1.0-1 - bam_plp_destroy@Base 1.0-1 - bam_plp_init@Base 1.0-1 - bam_plp_init_overlaps@Base 1.0-1 - bam_plp_next@Base 1.0-1 - bam_plp_push@Base 1.0-1 - bam_plp_reset@Base 1.0-1 - bam_plp_set_maxcnt@Base 1.0-1 - bam_read1@Base 1.0-1 - bam_str2flag@Base 1.0-1 - bam_write1@Base 1.0-1 - bcf_add_filter@Base 1.0-1 - bcf_calc_ac@Base 1.0-1 - bcf_clear@Base 1.0-1 - bcf_destroy@Base 1.0-1 - bcf_dup@Base 1.0-1 - bcf_empty1@Base 1.0-1 - bcf_enc_vchar@Base 1.0-1 - bcf_enc_vfloat@Base 1.0-1 - bcf_enc_vint@Base 1.0-1 - bcf_float_missing@Base 1.0-1 - bcf_float_vector_end@Base 1.0-1 - bcf_fmt_array@Base 1.0-1 - bcf_fmt_sized_array@Base 1.0-1 - bcf_get_fmt@Base 1.0-1 - bcf_get_format_string@Base 1.0-1 - bcf_get_format_values@Base 1.0-1 - bcf_get_info@Base 1.0-1 - bcf_get_info_values@Base 1.0-1 - bcf_get_variant_type@Base 1.0-1 - bcf_get_variant_types@Base 1.0-1 - bcf_gt_type@Base 1.0-1 - bcf_has_filter@Base 1.0-1 - bcf_hdr_add_hrec@Base 1.0-1 - bcf_hdr_add_sample@Base 1.0-1 - bcf_hdr_append@Base 1.0-1 - bcf_hdr_check_sanity@Base 1.0-1 - bcf_hdr_combine@Base 1.0-1 - bcf_hdr_destroy@Base 1.0-1 - bcf_hdr_dup@Base 1.0-1 - bcf_hdr_fmt_text@Base 1.0-1 - bcf_hdr_get_hrec@Base 1.0-1 - bcf_hdr_get_version@Base 1.0-1 - bcf_hdr_id2int@Base 1.0-1 - bcf_hdr_init@Base 1.0-1 - bcf_hdr_parse@Base 1.0-1 - bcf_hdr_parse_line@Base 1.0-1 - bcf_hdr_parse_sample_line@Base 1.0-1 - bcf_hdr_printf@Base 1.0-1 - bcf_hdr_read@Base 1.0-1 - bcf_hdr_register_hrec@Base 1.0-1 - bcf_hdr_remove@Base 1.0-1 - bcf_hdr_seqnames@Base 1.0-1 - bcf_hdr_set@Base 1.0-1 - bcf_hdr_set_samples@Base 1.0-1 - bcf_hdr_set_version@Base 1.0-1 - bcf_hdr_subset@Base 1.0-1 - bcf_hdr_sync@Base 1.0-1 - bcf_hdr_write@Base 1.0-1 - bcf_header_debug@Base 1.0-1 - bcf_hrec_add_key@Base 1.0-1 - bcf_hrec_debug@Base 1.0-1 - bcf_hrec_destroy@Base 1.0-1 - bcf_hrec_dup@Base 1.0-1 - bcf_hrec_find_key@Base 1.0-1 - bcf_hrec_format@Base 1.0-1 - bcf_hrec_set_val@Base 1.0-1 - bcf_index@Base 1.0-1 - bcf_index_build@Base 1.0-1 - bcf_init@Base 1.0-1 - bcf_is_snp@Base 1.0-1 - bcf_read@Base 1.0-1 - bcf_readrec@Base 1.0-1 - bcf_remove_alleles@Base 1.0-1 - bcf_remove_filter@Base 1.0-1 - bcf_sr_add_reader@Base 1.0-1 - bcf_sr_destroy@Base 1.0-1 - bcf_sr_init@Base 1.0-1 - bcf_sr_next_line@Base 1.0-1 - bcf_sr_regions_destroy@Base 1.0-1 - bcf_sr_regions_flush@Base 1.0-1 - bcf_sr_regions_init@Base 1.0-1 - bcf_sr_regions_next@Base 1.0-1 - bcf_sr_regions_overlap@Base 1.0-1 - bcf_sr_regions_seek@Base 1.0-1 - bcf_sr_remove_reader@Base 1.0-1 - bcf_sr_seek@Base 1.0-1 - bcf_sr_set_regions@Base 1.0-1 - bcf_sr_set_samples@Base 1.0-1 - bcf_sr_set_targets@Base 1.0-1 - bcf_subset@Base 1.0-1 - bcf_subset_format@Base 1.0-1 - bcf_sweep_bwd@Base 1.0-1 - bcf_sweep_destroy@Base 1.0-1 - bcf_sweep_fwd@Base 1.0-1 - bcf_sweep_hdr@Base 1.0-1 - bcf_sweep_init@Base 1.0-1 - bcf_translate@Base 1.0-1 - bcf_trim_alleles@Base 1.0-1 - bcf_type_shift@Base 1.0-1 - bcf_unpack@Base 1.0-1 - bcf_update_alleles@Base 1.0-1 - bcf_update_alleles_str@Base 1.0-1 - bcf_update_filter@Base 1.0-1 - bcf_update_format@Base 1.0-1 - bcf_update_format_string@Base 1.0-1 - bcf_update_id@Base 1.0-1 - bcf_update_info@Base 1.0-1 - bcf_write@Base 1.0-1 - bgzf_check_EOF@Base 1.0-1 - bgzf_close@Base 1.0-1 - bgzf_dopen@Base 1.0-1 - bgzf_flush@Base 1.0-1 - bgzf_flush_try@Base 1.0-1 - bgzf_getc@Base 1.0-1 - bgzf_getline@Base 1.0-1 - bgzf_hopen@Base 1.0-1 - bgzf_index_add_block@Base 1.0-1 - bgzf_index_build_init@Base 1.0-1 - bgzf_index_destroy@Base 1.0-1 - bgzf_index_dump@Base 1.0-1 - bgzf_index_load@Base 1.0-1 - bgzf_is_bgzf@Base 1.0-1 - bgzf_mt@Base 1.0-1 - bgzf_open@Base 1.0-1 - bgzf_raw_read@Base 1.0-1 - bgzf_raw_write@Base 1.0-1 - bgzf_read@Base 1.0-1 - bgzf_read_block@Base 1.0-1 - bgzf_seek@Base 1.0-1 - bgzf_set_cache_size@Base 1.0-1 - bgzf_useek@Base 1.0-1 - bgzf_utell@Base 1.0-1 - bgzf_write@Base 1.0-1 - cram_beta_decode_char@Base 1.0-1 - cram_beta_decode_free@Base 1.0-1 - cram_beta_decode_init@Base 1.0-1 - cram_beta_decode_int@Base 1.0-1 - cram_beta_encode_char@Base 1.0-1 - cram_beta_encode_free@Base 1.0-1 - cram_beta_encode_init@Base 1.0-1 - cram_beta_encode_int@Base 1.0-1 - cram_beta_encode_store@Base 1.0-1 - cram_block_method2str@Base 1.0-1 - cram_byte_array_len_decode@Base 1.0-1 - cram_byte_array_len_decode_free@Base 1.0-1 - cram_byte_array_len_decode_init@Base 1.0-1 - cram_byte_array_len_encode@Base 1.0-1 - cram_byte_array_len_encode_free@Base 1.0-1 - cram_byte_array_len_encode_init@Base 1.0-1 - cram_byte_array_len_encode_store@Base 1.0-1 - cram_byte_array_stop_decode_block@Base 1.0-1 - cram_byte_array_stop_decode_char@Base 1.0-1 - cram_byte_array_stop_decode_free@Base 1.0-1 - cram_byte_array_stop_decode_init@Base 1.0-1 - cram_byte_array_stop_encode@Base 1.0-1 - cram_byte_array_stop_encode_free@Base 1.0-1 - cram_byte_array_stop_encode_init@Base 1.0-1 - cram_byte_array_stop_encode_store@Base 1.0-1 - cram_close@Base 1.0-1 - cram_compress_block@Base 1.0-1 - cram_content_type2str@Base 1.0-1 - cram_decode_TD@Base 1.0-1 - cram_decode_compression_header@Base 1.0-1 - cram_decode_slice@Base 1.0-1 - cram_decode_slice_header@Base 1.0-1 - cram_decode_slice_mt@Base 1.0-1 - cram_decode_slice_thread@Base 1.0-1 - cram_decoder_init@Base 1.0-1 - cram_dopen@Base 1.0-1 - cram_encode_compression_header@Base 1.0-1 - cram_encode_container@Base 1.0-1 - cram_encode_slice_header@Base 1.0-1 - cram_encoder_init@Base 1.0-1 - cram_encoding2str@Base 1.0-1 - cram_eof@Base 1.0-1 - cram_external_decode_block@Base 1.0-1 - cram_external_decode_char@Base 1.0-1 - cram_external_decode_free@Base 1.0-1 - cram_external_decode_init@Base 1.0-1 - cram_external_decode_int@Base 1.0-1 - cram_external_encode@Base 1.0-1 - cram_external_encode_free@Base 1.0-1 - cram_external_encode_init@Base 1.0-1 - cram_external_encode_store@Base 1.0-1 - cram_flush@Base 1.0-1 - cram_flush_container@Base 1.0-1 - cram_flush_container_mt@Base 1.0-1 - cram_flush_thread@Base 1.0-1 - cram_free_block@Base 1.0-1 - cram_free_compression_header@Base 1.0-1 - cram_free_container@Base 1.0-1 - cram_free_file_def@Base 1.0-1 - cram_free_slice@Base 1.0-1 - cram_free_slice_header@Base 1.0-1 - cram_gamma_decode@Base 1.0-1 - cram_gamma_decode_free@Base 1.0-1 - cram_gamma_decode_init@Base 1.0-1 - cram_get_bam_seq@Base 1.0-1 - cram_get_ref@Base 1.0-1 - cram_get_seq@Base 1.0-1 - cram_header_to_bam@Base 1.0-1 - cram_huffman_decode_char0@Base 1.0-1 - cram_huffman_decode_char@Base 1.0-1 - cram_huffman_decode_free@Base 1.0-1 - cram_huffman_decode_init@Base 1.0-1 - cram_huffman_decode_int0@Base 1.0-1 - cram_huffman_decode_int@Base 1.0-1 - cram_huffman_encode_char0@Base 1.0-1 - cram_huffman_encode_char@Base 1.0-1 - cram_huffman_encode_free@Base 1.0-1 - cram_huffman_encode_init@Base 1.0-1 - cram_huffman_encode_int0@Base 1.0-1 - cram_huffman_encode_int@Base 1.0-1 - cram_huffman_encode_store@Base 1.0-1 - cram_index_build@Base 1.0-1 - cram_index_free@Base 1.0-1 - cram_index_load@Base 1.0-1 - cram_index_query@Base 1.0-1 - cram_load_reference@Base 1.0-1 - cram_new_block@Base 1.0-1 - cram_new_compression_header@Base 1.0-1 - cram_new_container@Base 1.0-1 - cram_new_metrics@Base 1.0-1 - cram_new_slice@Base 1.0-1 - cram_open@Base 1.0-1 - cram_put_bam_seq@Base 1.0-1 - cram_read_SAM_hdr@Base 1.0-1 - cram_read_block@Base 1.0-1 - cram_read_container@Base 1.0-1 - cram_read_file_def@Base 1.0-1 - cram_read_slice@Base 1.0-1 - cram_ref_decr@Base 1.0-1 - cram_ref_incr@Base 1.0-1 - cram_ref_load@Base 1.0-1 - cram_seek@Base 1.0-1 - cram_seek_to_refpos@Base 1.0-1 - cram_set_header@Base 1.0-1 - cram_set_option@Base 1.0-1 - cram_set_voption@Base 1.0-1 - cram_stats_add@Base 1.0-1 - cram_stats_create@Base 1.0-1 - cram_stats_del@Base 1.0-1 - cram_stats_dump@Base 1.0-1 - cram_stats_encoding@Base 1.0-1 - cram_stats_free@Base 1.0-1 - cram_subexp_decode@Base 1.0-1 - cram_subexp_decode_free@Base 1.0-1 - cram_subexp_decode_init@Base 1.0-1 - cram_uncompress_block@Base 1.0-1 - cram_write_SAM_hdr@Base 1.0-1 - cram_write_block@Base 1.0-1 - cram_write_container@Base 1.0-1 - cram_write_file_def@Base 1.0-1 - debug_buffer@Base 1.0-1 - debug_buffers@Base 1.0-1 - download_and_open@Base 1.0-1 - expand_cache_path@Base 1.0-1 - fai_build@Base 1.0-1 - fai_build_core@Base 1.0-1 - fai_destroy@Base 1.0-1 - fai_fetch@Base 1.0-1 - fai_load@Base 1.0-1 - fai_read@Base 1.0-1 - fai_save@Base 1.0-1 - faidx_fetch_nseq@Base 1.0-1 - faidx_fetch_seq@Base 1.0-1 - faidx_has_seq@Base 1.0-1 - file_exists@Base 1.0-1 - file_size@Base 1.0-1 - find_file_url@Base 1.0-1 - flen@Base 1.0-1 - hclose@Base 1.0-1 - hclose_abruptly@Base 1.0-1 - hdopen@Base 1.0-1 - hfile_destroy@Base 1.0-1 - hfile_init@Base 1.0-1 - hfile_oflags@Base 1.0-1 - hflush@Base 1.0-1 - hgetc2@Base 1.0-1 - hopen@Base 1.0-1 - hopen_net@Base 1.0-1 - hpeek@Base 1.0-1 - hputc2@Base 1.0-1 - hputs2@Base 1.0-1 - hread2@Base 1.0-1 - hrec_add_idx@Base 1.0-1 - hseek@Base 1.0-1 - hts_close@Base 1.0-1 - hts_file_type@Base 1.0-1 - hts_get_bgzfp@Base 1.0-1 - hts_getline@Base 1.0-1 - hts_idx_destroy@Base 1.0-1 - hts_idx_finish@Base 1.0-1 - hts_idx_get_meta@Base 1.0-1 - hts_idx_get_n_no_coor@Base 1.0-1 - hts_idx_get_stat@Base 1.0-1 - hts_idx_getfn@Base 1.0-1 - hts_idx_init@Base 1.0-1 - hts_idx_load@Base 1.0-1 - hts_idx_load_local@Base 1.0-1 - hts_idx_push@Base 1.0-1 - hts_idx_save@Base 1.0-1 - hts_idx_seqnames@Base 1.0-1 - hts_idx_set_meta@Base 1.0-1 - hts_itr_destroy@Base 1.0-1 - hts_itr_next@Base 1.0-1 - hts_itr_query@Base 1.0-1 - hts_itr_querys@Base 1.0-1 - hts_open@Base 1.0-1 - hts_parse_reg@Base 1.0-1 - hts_readlines@Base 1.0-1 - hts_readlist@Base 1.0-1 - hts_set_fai_filename@Base 1.0-1 - hts_set_threads@Base 1.0-1 - hts_useek@Base 1.0-1 - hts_utell@Base 1.0-1 - hts_verbose@Base 1.0-1 - hts_version@Base 1.0-1 - hwrite2@Base 1.0-1 - int32_decode@Base 1.0-1 - int32_encode@Base 1.0-1 - int32_get@Base 1.0-1 - int32_put@Base 1.0-1 - is_directory@Base 1.0-1 - is_file@Base 1.0-1 - itf8_decode@Base 1.0-1 - itf8_encode@Base 1.0-1 - itf8_put_blk@Base 1.0-1 - kf_betai@Base 1.0-1 - kf_erfc@Base 1.0-1 - kf_gammap@Base 1.0-1 - kf_gammaq@Base 1.0-1 - kf_lgamma@Base 1.0-1 - kftp_connect@Base 1.0-1 - kftp_connect_file@Base 1.0-1 - kftp_parse_url@Base 1.0-1 - kftp_reconnect@Base 1.0-1 - kh_clear_s2i@Base 1.0-1 - kh_del_s2i@Base 1.0-1 - kh_destroy_s2i@Base 1.0-1 - kh_get_s2i@Base 1.0-1 - kh_init_s2i@Base 1.0-1 - kh_put_s2i@Base 1.0-1 - kh_resize_s2i@Base 1.0-1 - khttp_connect_file@Base 1.0-1 - khttp_parse_url@Base 1.0-1 - kmemmem@Base 1.0-1 - knet_close@Base 1.0-1 - knet_dopen@Base 1.0-1 - knet_open@Base 1.0-1 - knet_read@Base 1.0-1 - knet_seek@Base 1.0-1 - ks_combsort__off@Base 1.0-1 - ks_destroy@Base 1.0-1 - ks_getuntil2@Base 1.0-1 - ks_heapadjust__off@Base 1.0-1 - ks_heapmake__off@Base 1.0-1 - ks_heapsort__off@Base 1.0-1 - ks_init@Base 1.0-1 - ks_introsort__off@Base 1.0-1 - ks_ksmall__off@Base 1.0-1 - ks_mergesort__off@Base 1.0-1 - ks_shuffle__off@Base 1.0-1 - ksplit_core@Base 1.0-1 - ksprintf@Base 1.0-1 - kstrnstr@Base 1.0-1 - kstrstr@Base 1.0-1 - kstrtok@Base 1.0-1 - kt_fisher_exact@Base 1.0-1 - kvsprintf@Base 1.0-1 - ltf8_decode@Base 1.0-1 - ltf8_get@Base 1.0-1 - ltf8_put@Base 1.0-1 - mfascii@Base 1.0-1 - mfclose@Base 1.0-1 - mfcreate@Base 1.0-1 - mfcreate_from@Base 1.0-1 - mfdestroy@Base 1.0-1 - mfdetach@Base 1.0-1 - mfeof@Base 1.0-1 - mfflush@Base 1.0-1 - mfgetc@Base 1.0-1 - mfgets@Base 1.0-1 - mfopen@Base 1.0-1 - mfprintf@Base 1.0-1 - mfread@Base 1.0-1 - mfrecreate@Base 1.0-1 - mfreopen@Base 1.0-1 - mfseek@Base 1.0-1 - mfsteal@Base 1.0-1 - mftell@Base 1.0-1 - mftruncate@Base 1.0-1 - mfwrite@Base 1.0-1 - mkdir_prefix@Base 1.0-1 - mrewind@Base 1.0-1 - mstderr@Base 1.0-1 - mstdin@Base 1.0-1 - mstdout@Base 1.0-1 - mungetc@Base 1.0-1 - open_path_mfile@Base 1.0-1 - paranoid_fclose@Base 1.0-1 - pool_alloc@Base 1.0-1 - pool_create@Base 1.0-1 - pool_destroy@Base 1.0-1 - pool_free@Base 1.0-1 - refs2id@Base 1.0-1 - refs_free@Base 1.0-1 - sam_format1@Base 1.0-1 - sam_hdr_PG_ID@Base 1.0-1 - sam_hdr_add@Base 1.0-1 - sam_hdr_add_PG@Base 1.0-1 - sam_hdr_add_lines@Base 1.0-1 - sam_hdr_decr_ref@Base 1.0-1 - sam_hdr_dump@Base 1.0-1 - sam_hdr_dup@Base 1.0-1 - sam_hdr_find@Base 1.0-1 - sam_hdr_find_key@Base 1.0-1 - sam_hdr_find_line@Base 1.0-1 - sam_hdr_find_rg@Base 1.0-1 - sam_hdr_free@Base 1.0-1 - sam_hdr_incr_ref@Base 1.0-1 - sam_hdr_length@Base 1.0-1 - sam_hdr_link_pg@Base 1.0-1 - sam_hdr_name2ref@Base 1.0-1 - sam_hdr_new@Base 1.0-1 - sam_hdr_parse@Base 1.0-1 - sam_hdr_parse_@Base 1.0-1 - sam_hdr_read@Base 1.0-1 - sam_hdr_rebuild@Base 1.0-1 - sam_hdr_str@Base 1.0-1 - sam_hdr_update@Base 1.0-1 - sam_hdr_vadd@Base 1.0-1 - sam_hdr_write@Base 1.0-1 - sam_index_load@Base 1.0-1 - sam_itr_queryi@Base 1.0-1 - sam_itr_querys@Base 1.0-1 - sam_open_mode@Base 1.0-1 - sam_parse1@Base 1.0-1 - sam_read1@Base 1.0-1 - sam_write1@Base 1.0-1 - seq_nt16_str@Base 1.0-1 - seq_nt16_table@Base 1.0-1 - string_alloc@Base 1.0-1 - string_dup@Base 1.0-1 - string_ndup@Base 1.0-1 - string_pool_create@Base 1.0-1 - string_pool_destroy@Base 1.0-1 - stringify_argv@Base 1.0-1 - t_pool_delete_result@Base 1.0-1 - t_pool_destroy@Base 1.0-1 - t_pool_dispatch2@Base 1.0-1 - t_pool_dispatch@Base 1.0-1 - t_pool_flush@Base 1.0-1 - t_pool_init@Base 1.0-1 - t_pool_next_result@Base 1.0-1 - t_pool_next_result_wait@Base 1.0-1 - t_pool_results_queue_empty@Base 1.0-1 - t_pool_results_queue_len@Base 1.0-1 - t_pool_results_queue_sz@Base 1.0-1 - t_results_queue_destroy@Base 1.0-1 - t_results_queue_init@Base 1.0-1 - tbx_conf_bed@Base 1.0-1 - tbx_conf_gff@Base 1.0-1 - tbx_conf_psltbl@Base 1.0-1 - tbx_conf_sam@Base 1.0-1 - tbx_conf_vcf@Base 1.0-1 - tbx_destroy@Base 1.0-1 - tbx_index@Base 1.0-1 - tbx_index_build@Base 1.0-1 - tbx_index_load@Base 1.0-1 - tbx_name2id@Base 1.0-1 - tbx_parse1@Base 1.0-1 - tbx_readrec@Base 1.0-1 - tbx_seqnames@Base 1.0-1 - tbx_set_meta@Base 1.0-1 - tokenise_search_path@Base 1.0-1 - vcf_format@Base 1.0-1 - vcf_hdr_read@Base 1.0-1 - vcf_hdr_write@Base 1.0-1 - vcf_parse@Base 1.0-1 - vcf_read@Base 1.0-1 - vcf_write@Base 1.0-1 - vcf_write_line@Base 1.0-1 - vflen@Base 1.0-1 - zfclose@Base 1.0-1 - zfeof@Base 1.0-1 - zfgets@Base 1.0-1 - zfopen@Base 1.0-1 - zfpeek@Base 1.0-1 - zfputs@Base 1.0-1 - zfseeko@Base 1.0-1 - zftello@Base 1.0-1 - zlib_mem_inflate@Base 1.0-1 + MD5_Final@Base 1.0 + MD5_Init@Base 1.0 + MD5_Update@Base 1.0 + _reader_next_line@Base 1.0 + _vcf_parse_format@Base 1.0 + bam_aux2A@Base 1.0 + bam_aux2Z@Base 1.0 + bam_aux2f@Base 1.0 + bam_aux2i@Base 1.0 + bam_aux_append@Base 1.0 + bam_aux_del@Base 1.0 + bam_aux_get@Base 1.0 + bam_cigar2qlen@Base 1.0 + bam_cigar2rlen@Base 1.0 + bam_construct_seq@Base 1.0 + bam_copy1@Base 1.0 + bam_destroy1@Base 1.0 + bam_dup1@Base 1.0 + bam_endpos@Base 1.0 + bam_flag2str@Base 1.0 + bam_hdr_destroy@Base 1.0 + bam_hdr_dup@Base 1.0 + bam_hdr_init@Base 1.0 + bam_hdr_read@Base 1.0 + bam_hdr_write@Base 1.0 + bam_header_to_cram@Base 1.0 + bam_index_build@Base 1.0 + bam_init1@Base 1.0 + bam_mplp_auto@Base 1.0 + bam_mplp_destroy@Base 1.0 + bam_mplp_init@Base 1.0 + bam_mplp_init_overlaps@Base 1.0 + bam_mplp_set_maxcnt@Base 1.0 + bam_name2id@Base 1.0 + bam_plp_auto@Base 1.0 + bam_plp_destroy@Base 1.0 + bam_plp_init@Base 1.0 + bam_plp_init_overlaps@Base 1.0 + bam_plp_next@Base 1.0 + bam_plp_push@Base 1.0 + bam_plp_reset@Base 1.0 + bam_plp_set_maxcnt@Base 1.0 + bam_read1@Base 1.0 + bam_str2flag@Base 1.0 + bam_write1@Base 1.0 + bcf_add_filter@Base 1.0 + bcf_calc_ac@Base 1.0 + bcf_clear@Base 1.0 + bcf_destroy@Base 1.0 + bcf_dup@Base 1.0 + bcf_empty1@Base 1.0 + bcf_enc_vchar@Base 1.0 + bcf_enc_vfloat@Base 1.0 + bcf_enc_vint@Base 1.0 + bcf_float_missing@Base 1.0 + bcf_float_vector_end@Base 1.0 + bcf_fmt_array@Base 1.0 + bcf_fmt_sized_array@Base 1.0 + bcf_get_fmt@Base 1.0 + bcf_get_format_string@Base 1.0 + bcf_get_format_values@Base 1.0 + bcf_get_info@Base 1.0 + bcf_get_info_values@Base 1.0 + bcf_get_variant_type@Base 1.0 + bcf_get_variant_types@Base 1.0 + bcf_gt_type@Base 1.0 + bcf_has_filter@Base 1.0 + bcf_hdr_add_hrec@Base 1.0 + bcf_hdr_add_sample@Base 1.0 + bcf_hdr_append@Base 1.0 + bcf_hdr_check_sanity@Base 1.0 + bcf_hdr_combine@Base 1.0 + bcf_hdr_destroy@Base 1.0 + bcf_hdr_dup@Base 1.0 + bcf_hdr_fmt_text@Base 1.0 + bcf_hdr_get_hrec@Base 1.0 + bcf_hdr_get_version@Base 1.0 + bcf_hdr_id2int@Base 1.0 + bcf_hdr_init@Base 1.0 + bcf_hdr_parse@Base 1.0 + bcf_hdr_parse_line@Base 1.0 + bcf_hdr_parse_sample_line@Base 1.0 + bcf_hdr_printf@Base 1.0 + bcf_hdr_read@Base 1.0 + bcf_hdr_register_hrec@Base 1.0 + bcf_hdr_remove@Base 1.0 + bcf_hdr_seqnames@Base 1.0 + bcf_hdr_set@Base 1.0 + bcf_hdr_set_samples@Base 1.0 + bcf_hdr_set_version@Base 1.0 + bcf_hdr_subset@Base 1.0 + bcf_hdr_sync@Base 1.0 + bcf_hdr_write@Base 1.0 + bcf_header_debug@Base 1.0 + bcf_hrec_add_key@Base 1.0 + bcf_hrec_debug@Base 1.0 + bcf_hrec_destroy@Base 1.0 + bcf_hrec_dup@Base 1.0 + bcf_hrec_find_key@Base 1.0 + bcf_hrec_format@Base 1.0 + bcf_hrec_set_val@Base 1.0 + bcf_index@Base 1.0 + bcf_index_build@Base 1.0 + bcf_init@Base 1.0 + bcf_is_snp@Base 1.0 + bcf_read@Base 1.0 + bcf_readrec@Base 1.0 + bcf_remove_alleles@Base 1.0 + bcf_remove_filter@Base 1.0 + bcf_sr_add_reader@Base 1.0 + bcf_sr_destroy@Base 1.0 + bcf_sr_init@Base 1.0 + bcf_sr_next_line@Base 1.0 + bcf_sr_regions_destroy@Base 1.0 + bcf_sr_regions_flush@Base 1.0 + bcf_sr_regions_init@Base 1.0 + bcf_sr_regions_next@Base 1.0 + bcf_sr_regions_overlap@Base 1.0 + bcf_sr_regions_seek@Base 1.0 + bcf_sr_remove_reader@Base 1.0 + bcf_sr_seek@Base 1.0 + bcf_sr_set_regions@Base 1.0 + bcf_sr_set_samples@Base 1.0 + bcf_sr_set_targets@Base 1.0 + bcf_subset@Base 1.0 + bcf_subset_format@Base 1.0 + bcf_sweep_bwd@Base 1.0 + bcf_sweep_destroy@Base 1.0 + bcf_sweep_fwd@Base 1.0 + bcf_sweep_hdr@Base 1.0 + bcf_sweep_init@Base 1.0 + bcf_translate@Base 1.0 + bcf_trim_alleles@Base 1.0 + bcf_type_shift@Base 1.0 + bcf_unpack@Base 1.0 + bcf_update_alleles@Base 1.0 + bcf_update_alleles_str@Base 1.0 + bcf_update_filter@Base 1.0 + bcf_update_format@Base 1.0 + bcf_update_format_string@Base 1.0 + bcf_update_id@Base 1.0 + bcf_update_info@Base 1.0 + bcf_write@Base 1.0 + bgzf_check_EOF@Base 1.0 + bgzf_close@Base 1.0 + bgzf_dopen@Base 1.0 + bgzf_flush@Base 1.0 + bgzf_flush_try@Base 1.0 + bgzf_getc@Base 1.0 + bgzf_getline@Base 1.0 + bgzf_hopen@Base 1.0 + bgzf_index_add_block@Base 1.0 + bgzf_index_build_init@Base 1.0 + bgzf_index_destroy@Base 1.0 + bgzf_index_dump@Base 1.0 + bgzf_index_load@Base 1.0 + bgzf_is_bgzf@Base 1.0 + bgzf_mt@Base 1.0 + bgzf_open@Base 1.0 + bgzf_raw_read@Base 1.0 + bgzf_raw_write@Base 1.0 + bgzf_read@Base 1.0 + bgzf_read_block@Base 1.0 + bgzf_seek@Base 1.0 + bgzf_set_cache_size@Base 1.0 + bgzf_useek@Base 1.0 + bgzf_utell@Base 1.0 + bgzf_write@Base 1.0 + cram_beta_decode_char@Base 1.0 + cram_beta_decode_free@Base 1.0 + cram_beta_decode_init@Base 1.0 + cram_beta_decode_int@Base 1.0 + cram_beta_encode_char@Base 1.0 + cram_beta_encode_free@Base 1.0 + cram_beta_encode_init@Base 1.0 + cram_beta_encode_int@Base 1.0 + cram_beta_encode_store@Base 1.0 + cram_block_method2str@Base 1.0 + cram_byte_array_len_decode@Base 1.0 + cram_byte_array_len_decode_free@Base 1.0 + cram_byte_array_len_decode_init@Base 1.0 + cram_byte_array_len_encode@Base 1.0 + cram_byte_array_len_encode_free@Base 1.0 + cram_byte_array_len_encode_init@Base 1.0 + cram_byte_array_len_encode_store@Base 1.0 + cram_byte_array_stop_decode_block@Base 1.0 + cram_byte_array_stop_decode_char@Base 1.0 + cram_byte_array_stop_decode_free@Base 1.0 + cram_byte_array_stop_decode_init@Base 1.0 + cram_byte_array_stop_encode@Base 1.0 + cram_byte_array_stop_encode_free@Base 1.0 + cram_byte_array_stop_encode_init@Base 1.0 + cram_byte_array_stop_encode_store@Base 1.0 + cram_close@Base 1.0 + cram_compress_block@Base 1.0 + cram_content_type2str@Base 1.0 + cram_decode_TD@Base 1.0 + cram_decode_compression_header@Base 1.0 + cram_decode_slice@Base 1.0 + cram_decode_slice_header@Base 1.0 + cram_decode_slice_mt@Base 1.0 + cram_decode_slice_thread@Base 1.0 + cram_decoder_init@Base 1.0 + cram_dopen@Base 1.0 + cram_encode_compression_header@Base 1.0 + cram_encode_container@Base 1.0 + cram_encode_slice_header@Base 1.0 + cram_encoder_init@Base 1.0 + cram_encoding2str@Base 1.0 + cram_eof@Base 1.0 + cram_external_decode_block@Base 1.0 + cram_external_decode_char@Base 1.0 + cram_external_decode_free@Base 1.0 + cram_external_decode_init@Base 1.0 + cram_external_decode_int@Base 1.0 + cram_external_encode@Base 1.0 + cram_external_encode_free@Base 1.0 + cram_external_encode_init@Base 1.0 + cram_external_encode_store@Base 1.0 + cram_flush@Base 1.0 + cram_flush_container@Base 1.0 + cram_flush_container_mt@Base 1.0 + cram_flush_thread@Base 1.0 + cram_free_block@Base 1.0 + cram_free_compression_header@Base 1.0 + cram_free_container@Base 1.0 + cram_free_file_def@Base 1.0 + cram_free_slice@Base 1.0 + cram_free_slice_header@Base 1.0 + cram_gamma_decode@Base 1.0 + cram_gamma_decode_free@Base 1.0 + cram_gamma_decode_init@Base 1.0 + cram_get_bam_seq@Base 1.0 + cram_get_ref@Base 1.0 + cram_get_seq@Base 1.0 + cram_header_to_bam@Base 1.0 + cram_huffman_decode_char0@Base 1.0 + cram_huffman_decode_char@Base 1.0 + cram_huffman_decode_free@Base 1.0 + cram_huffman_decode_init@Base 1.0 + cram_huffman_decode_int0@Base 1.0 + cram_huffman_decode_int@Base 1.0 + cram_huffman_encode_char0@Base 1.0 + cram_huffman_encode_char@Base 1.0 + cram_huffman_encode_free@Base 1.0 + cram_huffman_encode_init@Base 1.0 + cram_huffman_encode_int0@Base 1.0 + cram_huffman_encode_int@Base 1.0 + cram_huffman_encode_store@Base 1.0 + cram_index_build@Base 1.0 + cram_index_free@Base 1.0 + cram_index_load@Base 1.0 + cram_index_query@Base 1.0 + cram_load_reference@Base 1.0 + cram_new_block@Base 1.0 + cram_new_compression_header@Base 1.0 + cram_new_container@Base 1.0 + cram_new_metrics@Base 1.0 + cram_new_slice@Base 1.0 + cram_open@Base 1.0 + cram_put_bam_seq@Base 1.0 + cram_read_SAM_hdr@Base 1.0 + cram_read_block@Base 1.0 + cram_read_container@Base 1.0 + cram_read_file_def@Base 1.0 + cram_read_slice@Base 1.0 + cram_ref_decr@Base 1.0 + cram_ref_incr@Base 1.0 + cram_ref_load@Base 1.0 + cram_seek@Base 1.0 + cram_seek_to_refpos@Base 1.0 + cram_set_header@Base 1.0 + cram_set_option@Base 1.0 + cram_set_voption@Base 1.0 + cram_stats_add@Base 1.0 + cram_stats_create@Base 1.0 + cram_stats_del@Base 1.0 + cram_stats_dump@Base 1.0 + cram_stats_encoding@Base 1.0 + cram_stats_free@Base 1.0 + cram_subexp_decode@Base 1.0 + cram_subexp_decode_free@Base 1.0 + cram_subexp_decode_init@Base 1.0 + cram_uncompress_block@Base 1.0 + cram_write_SAM_hdr@Base 1.0 + cram_write_block@Base 1.0 + cram_write_container@Base 1.0 + cram_write_file_def@Base 1.0 + debug_buffer@Base 1.0 + debug_buffers@Base 1.0 + download_and_open@Base 1.0 + expand_cache_path@Base 1.0 + fai_build@Base 1.0 + fai_build_core@Base 1.0 + fai_destroy@Base 1.0 + fai_fetch@Base 1.0 + fai_load@Base 1.0 + fai_read@Base 1.0 + fai_save@Base 1.0 + faidx_fetch_nseq@Base 1.0 + faidx_fetch_seq@Base 1.0 + faidx_has_seq@Base 1.0 + file_exists@Base 1.0 + file_size@Base 1.0 + find_file_url@Base 1.0 + flen@Base 1.0 + hclose@Base 1.0 + hclose_abruptly@Base 1.0 + hdopen@Base 1.0 + hfile_destroy@Base 1.0 + hfile_init@Base 1.0 + hfile_oflags@Base 1.0 + hflush@Base 1.0 + hgetc2@Base 1.0 + hopen@Base 1.0 + hopen_net@Base 1.0 + hpeek@Base 1.0 + hputc2@Base 1.0 + hputs2@Base 1.0 + hread2@Base 1.0 + hrec_add_idx@Base 1.0 + hseek@Base 1.0 + hts_close@Base 1.0 + hts_file_type@Base 1.0 + hts_get_bgzfp@Base 1.0 + hts_getline@Base 1.0 + hts_idx_destroy@Base 1.0 + hts_idx_finish@Base 1.0 + hts_idx_get_meta@Base 1.0 + hts_idx_get_n_no_coor@Base 1.0 + hts_idx_get_stat@Base 1.0 + hts_idx_getfn@Base 1.0 + hts_idx_init@Base 1.0 + hts_idx_load@Base 1.0 + hts_idx_load_local@Base 1.0 + hts_idx_push@Base 1.0 + hts_idx_save@Base 1.0 + hts_idx_seqnames@Base 1.0 + hts_idx_set_meta@Base 1.0 + hts_itr_destroy@Base 1.0 + hts_itr_next@Base 1.0 + hts_itr_query@Base 1.0 + hts_itr_querys@Base 1.0 + hts_open@Base 1.0 + hts_parse_reg@Base 1.0 + hts_readlines@Base 1.0 + hts_readlist@Base 1.0 + hts_set_fai_filename@Base 1.0 + hts_set_threads@Base 1.0 + hts_useek@Base 1.0 + hts_utell@Base 1.0 + hts_verbose@Base 1.0 + hts_version@Base 1.0 + hwrite2@Base 1.0 + int32_decode@Base 1.0 + int32_encode@Base 1.0 + int32_get@Base 1.0 + int32_put@Base 1.0 + is_directory@Base 1.0 + is_file@Base 1.0 + itf8_decode@Base 1.0 + itf8_encode@Base 1.0 + itf8_put_blk@Base 1.0 + kf_betai@Base 1.0 + kf_erfc@Base 1.0 + kf_gammap@Base 1.0 + kf_gammaq@Base 1.0 + kf_lgamma@Base 1.0 + kftp_connect@Base 1.0 + kftp_connect_file@Base 1.0 + kftp_parse_url@Base 1.0 + kftp_reconnect@Base 1.0 + kh_clear_s2i@Base 1.0 + kh_del_s2i@Base 1.0 + kh_destroy_s2i@Base 1.0 + kh_get_s2i@Base 1.0 + kh_init_s2i@Base 1.0 + kh_put_s2i@Base 1.0 + kh_resize_s2i@Base 1.0 + khttp_connect_file@Base 1.0 + khttp_parse_url@Base 1.0 + kmemmem@Base 1.0 + knet_close@Base 1.0 + knet_dopen@Base 1.0 + knet_open@Base 1.0 + knet_read@Base 1.0 + knet_seek@Base 1.0 + ks_combsort__off@Base 1.0 + ks_destroy@Base 1.0 + ks_getuntil2@Base 1.0 + ks_heapadjust__off@Base 1.0 + ks_heapmake__off@Base 1.0 + ks_heapsort__off@Base 1.0 + ks_init@Base 1.0 + ks_introsort__off@Base 1.0 + ks_ksmall__off@Base 1.0 + ks_mergesort__off@Base 1.0 + ks_shuffle__off@Base 1.0 + ksplit_core@Base 1.0 + ksprintf@Base 1.0 + kstrnstr@Base 1.0 + kstrstr@Base 1.0 + kstrtok@Base 1.0 + kt_fisher_exact@Base 1.0 + kvsprintf@Base 1.0 + ltf8_decode@Base 1.0 + ltf8_get@Base 1.0 + ltf8_put@Base 1.0 + mfascii@Base 1.0 + mfclose@Base 1.0 + mfcreate@Base 1.0 + mfcreate_from@Base 1.0 + mfdestroy@Base 1.0 + mfdetach@Base 1.0 + mfeof@Base 1.0 + mfflush@Base 1.0 + mfgetc@Base 1.0 + mfgets@Base 1.0 + mfopen@Base 1.0 + mfprintf@Base 1.0 + mfread@Base 1.0 + mfrecreate@Base 1.0 + mfreopen@Base 1.0 + mfseek@Base 1.0 + mfsteal@Base 1.0 + mftell@Base 1.0 + mftruncate@Base 1.0 + mfwrite@Base 1.0 + mkdir_prefix@Base 1.0 + mrewind@Base 1.0 + mstderr@Base 1.0 + mstdin@Base 1.0 + mstdout@Base 1.0 + mungetc@Base 1.0 + open_path_mfile@Base 1.0 + paranoid_fclose@Base 1.0 + pool_alloc@Base 1.0 + pool_create@Base 1.0 + pool_destroy@Base 1.0 + pool_free@Base 1.0 + refs2id@Base 1.0 + refs_free@Base 1.0 + sam_format1@Base 1.0 + sam_hdr_PG_ID@Base 1.0 + sam_hdr_add@Base 1.0 + sam_hdr_add_PG@Base 1.0 + sam_hdr_add_lines@Base 1.0 + sam_hdr_decr_ref@Base 1.0 + sam_hdr_dump@Base 1.0 + sam_hdr_dup@Base 1.0 + sam_hdr_find@Base 1.0 + sam_hdr_find_key@Base 1.0 + sam_hdr_find_line@Base 1.0 + sam_hdr_find_rg@Base 1.0 + sam_hdr_free@Base 1.0 + sam_hdr_incr_ref@Base 1.0 + sam_hdr_length@Base 1.0 + sam_hdr_link_pg@Base 1.0 + sam_hdr_name2ref@Base 1.0 + sam_hdr_new@Base 1.0 + sam_hdr_parse@Base 1.0 + sam_hdr_parse_@Base 1.0 + sam_hdr_read@Base 1.0 + sam_hdr_rebuild@Base 1.0 + sam_hdr_str@Base 1.0 + sam_hdr_update@Base 1.0 + sam_hdr_vadd@Base 1.0 + sam_hdr_write@Base 1.0 + sam_index_load@Base 1.0 + sam_itr_queryi@Base 1.0 + sam_itr_querys@Base 1.0 + sam_open_mode@Base 1.0 + sam_parse1@Base 1.0 + sam_read1@Base 1.0 + sam_write1@Base 1.0 + seq_nt16_str@Base 1.0 + seq_nt16_table@Base 1.0 + string_alloc@Base 1.0 + string_dup@Base 1.0 + string_ndup@Base 1.0 + string_pool_create@Base 1.0 + string_pool_destroy@Base 1.0 + stringify_argv@Base 1.0 + t_pool_delete_result@Base 1.0 + t_pool_destroy@Base 1.0 + t_pool_dispatch2@Base 1.0 + t_pool_dispatch@Base 1.0 + t_pool_flush@Base 1.0 + t_pool_init@Base 1.0 + t_pool_next_result@Base 1.0 + t_pool_next_result_wait@Base 1.0 + t_pool_results_queue_empty@Base 1.0 + t_pool_results_queue_len@Base 1.0 + t_pool_results_queue_sz@Base 1.0 + t_results_queue_destroy@Base 1.0 + t_results_queue_init@Base 1.0 + tbx_conf_bed@Base 1.0 + tbx_conf_gff@Base 1.0 + tbx_conf_psltbl@Base 1.0 + tbx_conf_sam@Base 1.0 + tbx_conf_vcf@Base 1.0 + tbx_destroy@Base 1.0 + tbx_index@Base 1.0 + tbx_index_build@Base 1.0 + tbx_index_load@Base 1.0 + tbx_name2id@Base 1.0 + tbx_parse1@Base 1.0 + tbx_readrec@Base 1.0 + tbx_seqnames@Base 1.0 + tbx_set_meta@Base 1.0 + tokenise_search_path@Base 1.0 + vcf_format@Base 1.0 + vcf_hdr_read@Base 1.0 + vcf_hdr_write@Base 1.0 + vcf_parse@Base 1.0 + vcf_read@Base 1.0 + vcf_write@Base 1.0 + vcf_write_line@Base 1.0 + vflen@Base 1.0 + zfclose@Base 1.0 + zfeof@Base 1.0 + zfgets@Base 1.0 + zfopen@Base 1.0 + zfpeek@Base 1.0 + zfputs@Base 1.0 + zfseeko@Base 1.0 + zftello@Base 1.0 + zlib_mem_inflate@Base 1.0 -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/htslib.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
