Author: tille
Date: 2014-09-05 09:30:33 +0000 (Fri, 05 Sep 2014)
New Revision: 17944
Added:
trunk/packages/bowtie/trunk/debian/tests/example5.out.diff
Modified:
trunk/packages/bowtie/trunk/debian/tests/example5.out
trunk/packages/bowtie/trunk/debian/tests/run-unit-test
Log:
Reflect discussion on Debian Med list about unit testing
Modified: trunk/packages/bowtie/trunk/debian/tests/example5.out
===================================================================
--- trunk/packages/bowtie/trunk/debian/tests/example5.out 2014-09-05
08:46:47 UTC (rev 17943)
+++ trunk/packages/bowtie/trunk/debian/tests/example5.out 2014-09-05
09:30:33 UTC (rev 17944)
@@ -1,5 +1,5 @@
- gi|110640213|ref|NC_008253.1| 2852852 8:T>A
+- gi|110640213|ref|NC_008253.1| 148810 10:A>G,13:C>G
+ gi|110640213|ref|NC_008253.1| 1093035 2:T>G,15:A>T
- gi|110640213|ref|NC_008253.1| 905664 6:A>G,7:G>T
-- gi|110640213|ref|NC_008253.1| 148810 10:A>G,13:C>G
- gi|110640213|ref|NC_008253.1| 4930433 4:G>T,6:C>G
Added: trunk/packages/bowtie/trunk/debian/tests/example5.out.diff
===================================================================
--- trunk/packages/bowtie/trunk/debian/tests/example5.out.diff
(rev 0)
+++ trunk/packages/bowtie/trunk/debian/tests/example5.out.diff 2014-09-05
09:30:33 UTC (rev 17944)
@@ -0,0 +1,13 @@
+Please read README.Debian or the discussion at
+ https://lists.debian.org/debian-med/2014/09/msg00031.html
+about this difference
+
+--- example5.out.orig 2014-09-03 11:27:25.000000000 +0200
++++ example5.out 2014-09-03 12:16:13.612777963 +0200
+@@ -1,5 +1,5 @@
+ - gi|110640213|ref|NC_008253.1| 2852852 8:T>A
++- gi|110640213|ref|NC_008253.1| 148810 10:A>G,13:C>G
+ + gi|110640213|ref|NC_008253.1| 1093035 2:T>G,15:A>T
+ - gi|110640213|ref|NC_008253.1| 905664 6:A>G,7:G>T
+-- gi|110640213|ref|NC_008253.1| 148810 10:A>G,13:C>G
+ - gi|110640213|ref|NC_008253.1| 4930433 4:G>T,6:C>G
Modified: trunk/packages/bowtie/trunk/debian/tests/run-unit-test
===================================================================
--- trunk/packages/bowtie/trunk/debian/tests/run-unit-test 2014-09-05
08:46:47 UTC (rev 17943)
+++ trunk/packages/bowtie/trunk/debian/tests/run-unit-test 2014-09-05
09:30:33 UTC (rev 17944)
@@ -33,9 +33,13 @@
bowtie -v 2 e_coli --suppress 1,5,6,7 -c ATGCATCATGCGCCAT
> example4.out
check_result example4
bowtie -a --best -v 2 e_coli --suppress 1,5,6,7 -c ATGCATCATGCGCCAT
> example5.out
+# Please read README.Debian or
+# https://lists.debian.org/debian-med/2014/09/msg00031.html
+# to evaluate the result od this test.
# check_result example5
-echo "There is a known difference between the manual and the test result"
-diff -u tests/example5.out example5.out
+# echo "There is a known difference between the manual and the test result"
+# diff -u tests/example5.out example5.out
+check_result example5
bowtie -a --best --strata -v 2 --suppress 1,5,6,7 e_coli -c ATGCATCATGCGCCAT
> example6.out
check_result example6
# The "No alignments" string is the end of stderr output
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