Author: tille Date: 2014-10-23 20:58:37 +0000 (Thu, 23 Oct 2014) New Revision: 18388
Modified: trunk/packages/last-align/trunk/debian/changelog trunk/packages/last-align/trunk/debian/copyright trunk/packages/last-align/trunk/debian/rules Log: Upstream dropped .py suffix - adpapt help2man calls in d/rules Modified: trunk/packages/last-align/trunk/debian/changelog =================================================================== --- trunk/packages/last-align/trunk/debian/changelog 2014-10-23 20:38:08 UTC (rev 18387) +++ trunk/packages/last-align/trunk/debian/changelog 2014-10-23 20:58:37 UTC (rev 18388) @@ -3,6 +3,7 @@ * New upstream version * get-orig-source target now with xz compression * cme fix dpkg-control + * Upstream dropped .py suffix - adpapt help2man calls in d/rules -- Andreas Tille <[email protected]> Thu, 23 Oct 2014 22:30:48 +0200 Modified: trunk/packages/last-align/trunk/debian/copyright =================================================================== --- trunk/packages/last-align/trunk/debian/copyright 2014-10-23 20:38:08 UTC (rev 18387) +++ trunk/packages/last-align/trunk/debian/copyright 2014-10-23 20:58:37 UTC (rev 18388) @@ -13,17 +13,17 @@ Comment: On Debian systems the full text of the GNU General Public License can be found in the `/usr/share/common-licenses/GPL-3' file. -Files: CA_code/* +Files: src/CA_code/* Copyright: not copyrighted License: public-domain Public domain code from Yi-Kuo Yu & Stephen Altschul, NCBI -Files: CA_code/lambda_calculator.c +Files: src/CA_code/lambda_calculator.c Copyright: © 2008 Michiaki Hamada License: GPL-3+ Comment: Adapted from public domain code by Yi-Kuo Yu, NCBI -Files: CA_code/lambda_calculator.h +Files: src/CA_code/lambda_calculator.h Copyright: © 2008 Michiaki Hamada License: GPL-3+ Modified: trunk/packages/last-align/trunk/debian/rules =================================================================== --- trunk/packages/last-align/trunk/debian/rules 2014-10-23 20:38:08 UTC (rev 18387) +++ trunk/packages/last-align/trunk/debian/rules 2014-10-23 20:58:37 UTC (rev 18388) @@ -25,14 +25,14 @@ override_dh_auto_install: make install prefix=$(CURDIR)/debian/$(pkg)/usr - prename 's/.py$$//' debian/$(pkg)/usr/bin/*py - prename 's/.sh$$//' debian/$(pkg)/usr/bin/*sh +# prename 's/.py$$//' debian/$(pkg)/usr/bin/*py +# prename 's/.sh$$//' debian/$(pkg)/usr/bin/*sh # try to create man pages whereever possible mkdir -p $(mandir) $(HELP2MAN) \ --name='make a dotplot, a.k.a. Oxford Grid, of alignments in LAST tabular format' \ - $(CURDIR)/scripts/last-dotplot.py > $(mandir)/last-dotplot.1 + $(CURDIR)/scripts/last-dotplot > $(mandir)/last-dotplot.1 $(HELP2MAN) \ --name="genome-scale comparison of biological sequences" \ --help-option="-h" \ @@ -47,39 +47,39 @@ $(CURDIR)/src/lastex > $(mandir)/lastex.1 $(HELP2MAN) \ --name="Sort MAF-format alignments by sequence name" \ - $(CURDIR)/scripts/maf-sort.sh > $(mandir)/maf-sort.1 + $(CURDIR)/scripts/maf-sort > $(mandir)/maf-sort.1 $(HELP2MAN) \ --name="changes the order of the sequences in MAF-format alignments" \ - $(CURDIR)/scripts/maf-swap.py > $(mandir)/maf-swap.1 + $(CURDIR)/scripts/maf-swap > $(mandir)/maf-swap.1 $(HELP2MAN) \ --name="Add extra column with mapping probabilities" \ - $(CURDIR)/scripts/last-map-probs.py > $(mandir)/last-map-probs.1 + $(CURDIR)/scripts/last-map-probs > $(mandir)/last-map-probs.1 # This script has not enough to put in a manual page. #$(HELP2MAN) \ # --name="Read files of lastal output, merge corresponding batches, and write them." \ - # $(CURDIR)/scripts/last-merge-batches.py > $(mandir)/last-merge-batches.1 + # $(CURDIR)/scripts/last-merge-batches > $(mandir)/last-merge-batches.1 # These scripts were droped #$(HELP2MAN) \ # --name="Clean up MAF-format alignments" \ - # $(CURDIR)/scripts/last-reduce-alignments.sh > $(mandir)/last-reduce-alignments.1 + # $(CURDIR)/scripts/last-reduce-alignments > $(mandir)/last-reduce-alignments.1 #$(HELP2MAN) \ # --name='Remove MAF-format alignments which are "dominated" by others' \ - # $(CURDIR)/scripts/last-remove-dominated.py > $(mandir)/last-remove-dominated.1 + # $(CURDIR)/scripts/last-remove-dominated > $(mandir)/last-remove-dominated.1 $(HELP2MAN) \ --name='Estimates "split" or "spliced" alignments.' \ $(CURDIR)/src/last-split > $(mandir)/last-split.1 $(HELP2MAN) \ --name="Join two or more sets of MAF-format multiple alignments" \ - $(CURDIR)/scripts/maf-join.py > $(mandir)/maf-join.1 + $(CURDIR)/scripts/maf-join > $(mandir)/maf-join.1 $(HELP2MAN) \ --name="Convert MAF-format alignments to tabular format" \ - $(CURDIR)/scripts/maf-convert.py > $(mandir)/maf-convert.1 + $(CURDIR)/scripts/maf-convert > $(mandir)/maf-convert.1 $(HELP2MAN) \ --name="Cull alignments whose top\-sequence coordinates are contained in LIMIT or more" \ - $(CURDIR)/scripts/maf-cull.py > $(mandir)/maf-cull.1 + $(CURDIR)/scripts/maf-cull > $(mandir)/maf-cull.1 $(HELP2MAN) \ --name="Read alignments of paired DNA reads to a genome" \ - $(CURDIR)/scripts/last-pair-probs.py > $(mandir)/last-pair-probs.1 + $(CURDIR)/scripts/last-pair-probs > $(mandir)/last-pair-probs.1 override_dh_installchangelogs: dh_installchangelogs ChangeLog.txt _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
