Author: tille
Date: 2015-01-19 20:52:46 +0000 (Mon, 19 Jan 2015)
New Revision: 18589
Modified:
trunk/packages/vsearch/trunk/debian/rules
trunk/packages/vsearch/trunk/debian/tests/run-unit-test
trunk/packages/vsearch/trunk/debian/vsearch-data.install
Log:
Fixes in data package to enable running full test suite
Modified: trunk/packages/vsearch/trunk/debian/rules
===================================================================
--- trunk/packages/vsearch/trunk/debian/rules 2015-01-19 19:00:42 UTC (rev
18588)
+++ trunk/packages/vsearch/trunk/debian/rules 2015-01-19 20:52:46 UTC (rev
18589)
@@ -39,7 +39,7 @@
dh_install
# tweak path tp vsearch binary in test scripts
mkdir -p $(CURDIR)/debian/$(pkg)-data/usr/share/doc/$(pkg)/test
- for tst in test/*.sh ; do sed
's?VSEARCH=../src/vsearch?VSEARCH=/usr/bin/vsearch?' $${tst} >
$(CURDIR)/debian/$(pkg)-data/usr/share/doc/$(pkg)/$${tst} ; done
+ for tst in test/*.sh ; do sed 's?\.\./src/vsearch?/usr/bin/vsearch?'
$${tst} > $(CURDIR)/debian/$(pkg)-data/usr/share/doc/$(pkg)/$${tst} ; done
get-orig-source:
uscan --verbose --force-download --repack --compression xz
Modified: trunk/packages/vsearch/trunk/debian/tests/run-unit-test
===================================================================
--- trunk/packages/vsearch/trunk/debian/tests/run-unit-test 2015-01-19
19:00:42 UTC (rev 18588)
+++ trunk/packages/vsearch/trunk/debian/tests/run-unit-test 2015-01-19
20:52:46 UTC (rev 18589)
@@ -6,7 +6,10 @@
fi
cd $ADTTMP
mkdir -p data
-cd data && tar xaf /usr/share/doc/${pkg}/examples/simm.tar.gz
+cd data
+tar xaf /usr/share/doc/${pkg}/examples/simm.tar.gz
+cp -a /usr/share/doc/${pkg}/examples/[A-Z]* .
+gunzip BioMarKs50k* [PR]*.gz
cd ..
cp -a /usr/share/doc/${pkg}/test .
cd test
Modified: trunk/packages/vsearch/trunk/debian/vsearch-data.install
===================================================================
--- trunk/packages/vsearch/trunk/debian/vsearch-data.install 2015-01-19
19:00:42 UTC (rev 18588)
+++ trunk/packages/vsearch/trunk/debian/vsearch-data.install 2015-01-19
20:52:46 UTC (rev 18589)
@@ -1,3 +1,6 @@
-data/simm.tar.gz usr/share/doc/vsearch/examples
-data/Rfam_11_0.fasta usr/share/doc/vsearch/examples
-data/BioMarKs50k.fsa usr/share/doc/vsearch/examples
+data/simm.tar.gz usr/share/doc/vsearch/examples
+data/BioMarKs50k.fsa usr/share/doc/vsearch/examples
+data/BioMarKs.fsa.* usr/share/doc/vsearch/examples
+data/PR2-18S-rRNA-V4.fsa* usr/share/doc/vsearch/examples
+data/Rfam_11_0.* usr/share/doc/vsearch/examples
+data/Rfam_9_1.fasta usr/share/doc/vsearch/examples
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