Author: tille Date: 2015-01-29 13:26:47 +0000 (Thu, 29 Jan 2015) New Revision: 18623
Modified: trunk/packages/rna-star/trunk/debian/README.Debian trunk/packages/rna-star/trunk/debian/changelog trunk/packages/rna-star/trunk/debian/control trunk/packages/rna-star/trunk/debian/copyright trunk/packages/rna-star/trunk/debian/install Log: Team maintenance, enhanced description Modified: trunk/packages/rna-star/trunk/debian/README.Debian =================================================================== --- trunk/packages/rna-star/trunk/debian/README.Debian 2015-01-29 13:16:51 UTC (rev 18622) +++ trunk/packages/rna-star/trunk/debian/README.Debian 2015-01-29 13:26:47 UTC (rev 18623) @@ -1,8 +1,6 @@ rna-star for Debian ------------------- -The packaging is not completed. Please adopt. - The package name reflects the project name with Google Code - just "star" was considered too ambiguous. Modified: trunk/packages/rna-star/trunk/debian/changelog =================================================================== --- trunk/packages/rna-star/trunk/debian/changelog 2015-01-29 13:16:51 UTC (rev 18622) +++ trunk/packages/rna-star/trunk/debian/changelog 2015-01-29 13:26:47 UTC (rev 18623) @@ -1,5 +1,5 @@ rna-star (2.4.0i-1) unstable; urgency=low - * Initial release (Closes: #nnnn) <nnnn is the bug number of your ITP> + * Initial release (Closes: #nnnn) - -- Steffen Moeller <[email protected]> Wed, 28 Jan 2015 18:15:51 +0100 + -- Andreas Tille <[email protected]> Thu, 29 Jan 2015 14:18:44 +0100 Modified: trunk/packages/rna-star/trunk/debian/control =================================================================== --- trunk/packages/rna-star/trunk/debian/control 2015-01-29 13:16:51 UTC (rev 18622) +++ trunk/packages/rna-star/trunk/debian/control 2015-01-29 13:26:47 UTC (rev 18623) @@ -1,7 +1,9 @@ Source: rna-star Section: science Priority: optional -Maintainer: Steffen Moeller <[email protected]> +Maintainer: Debian Med Packaging Team <[email protected]> +Uploaders: Steffen Moeller <[email protected]>, + Andreas Tille <[email protected]> Build-Depends: debhelper (>= 9), libhts-dev Standards-Version: 3.9.6 Homepage: https://code.google.com/p/rna-star/ @@ -10,10 +12,19 @@ Package: rna-star Architecture: any -Depends: ${shlibs:Depends}, ${misc:Depends} -Description: Spliced Transcripts Alignment to a Reference - STAR is an ultrafast universal RNA-seq aligner. - . - A. Dobin et al, Bioinformatics 2012; - doi: 10.1093/bioinformatics/bts635 - http://bioinformatics.oxfordjournals.org/content/29/1/15 +Depends: ${misc:Depends}, ${shlibs:Depends} +Description: ultrafast universal RNA-seq aligner. + Spliced Transcripts Alignment to a Reference (STAR) software based on a + previously undescribed RNA-seq alignment algorithm that uses sequential + maximum mappable seed search in uncompressed suffix arrays followed by + seed clustering and stitching procedure. STAR outperforms other aligners + by a factor of >50 in mapping speed, aligning to the human genome 550 + million 2 × 76 bp paired-end reads per hour on a modest 12-core server, + while at the same time improving alignment sensitivity and precision. In + addition to unbiased de novo detection of canonical junctions, STAR can + discover non-canonical splices and chimeric (fusion) transcripts, and is + also capable of mapping full-length RNA sequences. Using Roche 454 + sequencing of reverse transcription polymerase chain reaction amplicons, + we experimentally validated 1960 novel intergenic splice junctions with + an 80-90% success rate, corroborating the high precision of the STAR + mapping strategy. Modified: trunk/packages/rna-star/trunk/debian/copyright =================================================================== --- trunk/packages/rna-star/trunk/debian/copyright 2015-01-29 13:16:51 UTC (rev 18622) +++ trunk/packages/rna-star/trunk/debian/copyright 2015-01-29 13:26:47 UTC (rev 18623) @@ -13,7 +13,7 @@ . <Including paragraphs> -# If you want to use GPL v2 or later for the /debian/* files use +# If you want to use GPL v2 or later for the /debian/* files use # the following clauses, or change it to suit. Delete these two lines Files: debian/* Copyright: 2015 Steffen Moeller <[email protected]> Modified: trunk/packages/rna-star/trunk/debian/install =================================================================== --- trunk/packages/rna-star/trunk/debian/install 2015-01-29 13:16:51 UTC (rev 18622) +++ trunk/packages/rna-star/trunk/debian/install 2015-01-29 13:26:47 UTC (rev 18623) @@ -0,0 +1 @@ + _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
