Author: tille Date: 2015-01-30 06:49:18 +0000 (Fri, 30 Jan 2015) New Revision: 18636
Added: trunk/packages/rna-star/trunk/debian/doc-base Log: docbase file Added: trunk/packages/rna-star/trunk/debian/doc-base =================================================================== --- trunk/packages/rna-star/trunk/debian/doc-base (rev 0) +++ trunk/packages/rna-star/trunk/debian/doc-base 2015-01-30 06:49:18 UTC (rev 18636) @@ -0,0 +1,22 @@ +Document: rna-star +Title: STAR manual +Author: Alexnder Dobin <[email protected]> +Abstract: ultrafast universal RNA-seq aligner + Spliced Transcripts Alignment to a Reference (STAR) software based on a + previously undescribed RNA-seq alignment algorithm that uses sequential + maximum mappable seed search in uncompressed suffix arrays followed by + seed clustering and stitching procedure. STAR outperforms other aligners + by a factor of >50 in mapping speed, aligning to the human genome 550 + million 2 × 76 bp paired-end reads per hour on a modest 12-core server, + while at the same time improving alignment sensitivity and precision. In + addition to unbiased de novo detection of canonical junctions, STAR can + discover non-canonical splices and chimeric (fusion) transcripts, and is + also capable of mapping full-length RNA sequences. Using Roche 454 + sequencing of reverse transcription polymerase chain reaction amplicons, + the authors experimentally validated 1960 novel intergenic splice + junctions with an 80-90% success rate, corroborating the high precision + of the STAR mapping strategy. +Section: Science/Biology + +Format: pdf +Files: /usr/share/doc/rna-star/STARmanual.pdf _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
