This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository freebayes.
commit 5d04db52934c2c9f3e8bb86ff86310c5aba9cb90 Merge: 0b191b0 d480098 Author: Andreas Tille <[email protected]> Date: Sun Feb 1 08:38:47 2015 +0100 Merge tag 'upstream/0.9.20' Upstream version 0.9.20 Conflicts: .gitignore .gitignore | 6 +- .gitmodules | 2 +- CONTRIBUTORS | 7 + Makefile | 9 +- README.md | 126 ++- paper/1000G_performance_comparison.png | Bin 0 -> 61887 bytes paper/100samples10x_0_25_both.png | Bin 0 -> 89862 bytes paper/Makefile | 10 + paper/genome_research.bst | 1620 ++++++++++++++++++++++++++++++++ paper/haplotype_calling.png | Bin 0 -> 175436 bytes paper/indel_error.png | Bin 0 -> 44097 bytes paper/low_frequency_sensitivity.png | Bin 0 -> 138914 bytes paper/main.aux | 121 +++ paper/main.bbl | 170 ++++ paper/main.blg | 49 + paper/main.pdf | Bin 0 -> 846894 bytes paper/main.tex | 664 +++++++++++++ paper/miseq.png | Bin 0 -> 80796 bytes paper/omni_errors.png | Bin 0 -> 94711 bytes paper/references.bib | 321 +++++++ scripts/coverage_to_regions.py | 51 + scripts/fasta_generate_regions.py | 8 +- scripts/freebayes-parallel | 40 + src/Allele.cpp | 4 + src/AlleleParser.cpp | 447 +++++---- src/AlleleParser.h | 10 +- src/BedReader.cpp | 5 + src/BedReader.h | 2 +- src/Genotype.cpp | 47 +- src/GenotypePriors.cpp | 11 +- src/Makefile | 66 +- src/Marginals.cpp | 10 +- src/Parameters.cpp | 115 ++- src/Parameters.h | 1 + src/ResultData.cpp | 28 +- src/freebayes.cpp | 44 +- src/version_git.h | 4 - src/version_release.txt | 6 +- 38 files changed, 3687 insertions(+), 317 deletions(-) -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/freebayes.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
