Author: tille
Date: 2015-02-12 14:06:31 +0000 (Thu, 12 Feb 2015)
New Revision: 18764
Added:
trunk/packages/python-miso/trunk/debian/bin/index_gff
trunk/packages/python-miso/trunk/debian/bin/miso
Modified:
trunk/packages/python-miso/trunk/debian/bin/sam_to_bam
trunk/packages/python-miso/trunk/debian/changelog
trunk/packages/python-miso/trunk/debian/rules
Log:
Also try to eleminate non-critical errors in test suite
Added: trunk/packages/python-miso/trunk/debian/bin/index_gff
===================================================================
--- trunk/packages/python-miso/trunk/debian/bin/index_gff
(rev 0)
+++ trunk/packages/python-miso/trunk/debian/bin/index_gff 2015-02-12
14:06:31 UTC (rev 18764)
@@ -0,0 +1 @@
+link sam_to_bam
\ No newline at end of file
Property changes on: trunk/packages/python-miso/trunk/debian/bin/index_gff
___________________________________________________________________
Added: svn:special
+ *
Added: trunk/packages/python-miso/trunk/debian/bin/miso
===================================================================
--- trunk/packages/python-miso/trunk/debian/bin/miso
(rev 0)
+++ trunk/packages/python-miso/trunk/debian/bin/miso 2015-02-12 14:06:31 UTC
(rev 18764)
@@ -0,0 +1 @@
+link sam_to_bam
\ No newline at end of file
Property changes on: trunk/packages/python-miso/trunk/debian/bin/miso
___________________________________________________________________
Added: svn:special
+ *
Modified: trunk/packages/python-miso/trunk/debian/bin/sam_to_bam
===================================================================
--- trunk/packages/python-miso/trunk/debian/bin/sam_to_bam 2015-02-12
13:16:14 UTC (rev 18763)
+++ trunk/packages/python-miso/trunk/debian/bin/sam_to_bam 2015-02-12
14:06:31 UTC (rev 18764)
@@ -1,2 +1,3 @@
#!/bin/sh
-python misopy/sam_to_bam.py $@
+name=`basename $0`
+python misopy/${name}.py $@
Modified: trunk/packages/python-miso/trunk/debian/changelog
===================================================================
--- trunk/packages/python-miso/trunk/debian/changelog 2015-02-12 13:16:14 UTC
(rev 18763)
+++ trunk/packages/python-miso/trunk/debian/changelog 2015-02-12 14:06:31 UTC
(rev 18764)
@@ -1,5 +1,5 @@
python-miso (0.5.2-1) UNRELEASED; urgency=low
- * Initial release (Closes: #nnnn) <nnnn is the bug number of your ITP>
+ * Initial release (Closes: #nnnn)
-- Andreas Tille <ti...@debian.org> Tue, 10 Feb 2015 17:55:01 +0100
Modified: trunk/packages/python-miso/trunk/debian/rules
===================================================================
--- trunk/packages/python-miso/trunk/debian/rules 2015-02-12 13:16:14 UTC
(rev 18763)
+++ trunk/packages/python-miso/trunk/debian/rules 2015-02-12 14:06:31 UTC
(rev 18764)
@@ -7,10 +7,14 @@
dh $@ --with python2 --buildsystem=pybuild
override_dh_auto_test:
-
PATH=$(CURDIR)/debian/bin:$${PATH} \
PYBUILD_SYSTEM=custom \
- PYBUILD_TEST_ARGS="ln -s ../../../../misopy/test-data
{build_dir}/misopy && cd {build_dir} && PYTHONPATH={build_dir} python -m
unittest discover -v" \
+ PYBUILD_TEST_ARGS="\
+ ln -s ../../../../misopy/test-data {build_dir}/misopy && \
+ mkdir -p {build_dir}/misopy/gff-events/mm9/genes && \
+ ln -s
../../../../../../../misopy/gff-events/mm9/genes/Atp2b1.mm9.gff
{build_dir}/misopy/gff-events/mm9/genes && \
+ cd {build_dir} && \
+ PYTHONPATH={build_dir} python -m unittest discover -v" \
dh_auto_test --buildsystem=pybuild
override_dh_clean:
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