This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository express.
commit 1085fad9ea4ab428e2d02126ef9f4056e704ee19 Author: Andreas Tille <[email protected]> Date: Tue Feb 17 11:29:00 2015 +0100 Add doc-base control file --- debian/doc-base | 23 +++++++++++++++++++++++ 1 file changed, 23 insertions(+) diff --git a/debian/doc-base b/debian/doc-base new file mode 100644 index 0000000..aa0db8d --- /dev/null +++ b/debian/doc-base @@ -0,0 +1,23 @@ +Document: express +Title: doxygen documentation for eXpress +Author: Adam Roberts, Lior Pachter +Abstract: Streaming quantification for high-throughput sequencing + eXpress is a streaming tool for quantifying the abundances of a set of + target sequences from sampled subsequences. Example applications include + transcript-level RNA-Seq quantification, allele-specific/haplotype + expression analysis (from RNA-Seq), transcription factor binding + quantification in ChIP-Seq, and analysis of metagenomic data. It is + based on an online-EM algorithm that results in space (memory) + requirements proportional to the total size of the target sequences and + time requirements that are proportional to the number of sampled + fragments. Thus, in applications such as RNA-Seq, eXpress can accurately + quantify much larger samples than other currently available tools + greatly reducing computing infrastructure requirements. eXpress can be + used to build lightweight high-throughput sequencing processing + pipelines when coupled with a streaming aligner (such as Bowtie), as + output can be piped directly into eXpress, effectively eliminating the + need to store read alignments in memory or on disk. +Section: Science/Biology + +Format: pdf +Files: /usr/share/doc/express/express-doc.pdf.gz -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/express.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
