Author: tille
Date: 2015-02-26 21:25:20 +0000 (Thu, 26 Feb 2015)
New Revision: 18866
Added:
trunk/packages/trimmomatic/trunk/debian/README.Debian
Modified:
trunk/packages/trimmomatic/trunk/debian/bin/TrimmomaticPE
trunk/packages/trimmomatic/trunk/debian/changelog
trunk/packages/trimmomatic/trunk/debian/install
Log:
Add proper description for programm call in README.Debian
Added: trunk/packages/trimmomatic/trunk/debian/README.Debian
===================================================================
--- trunk/packages/trimmomatic/trunk/debian/README.Debian
(rev 0)
+++ trunk/packages/trimmomatic/trunk/debian/README.Debian 2015-02-26
21:25:20 UTC (rev 18866)
@@ -0,0 +1,11 @@
+Trimmomatic for Debian
+======================
+
+The adapters are installed to /usr/share/trimmomatic/*.fa
+Here is an example command line:
+
+ TrimmomaticSE --phred33 input.fq.gz output.fq.gz \
+ ILLUMINACLIP:/usr/share/trimmomatic/TruSeq3-SE:2:30:10 \
+ LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36
+
+ -- Andreas Tille <[email protected]> Thu, 26 Feb 2015 21:52:47 +0100
Modified: trunk/packages/trimmomatic/trunk/debian/bin/TrimmomaticPE
===================================================================
--- trunk/packages/trimmomatic/trunk/debian/bin/TrimmomaticPE 2015-02-26
21:16:42 UTC (rev 18865)
+++ trunk/packages/trimmomatic/trunk/debian/bin/TrimmomaticPE 2015-02-26
21:25:20 UTC (rev 18866)
@@ -8,5 +8,4 @@
exit 1
fi
-export ILLUMINACLIP=/usr/share/${ILLUMINACLIP}/adapters
java -classpath "$JARVERSION" org.usadellab.$PKGNAME.$FUNCTIONTOCALL $@
Modified: trunk/packages/trimmomatic/trunk/debian/changelog
===================================================================
--- trunk/packages/trimmomatic/trunk/debian/changelog 2015-02-26 21:16:42 UTC
(rev 18865)
+++ trunk/packages/trimmomatic/trunk/debian/changelog 2015-02-26 21:25:20 UTC
(rev 18866)
@@ -1,6 +1,6 @@
trimmomatic (0.32+dfsg-3) UNRELEASED; urgency=medium
- * Install adapter files
+ * Install adapter files and document their usage in d/README.Debian
Closes: #779296
-- Andreas Tille <[email protected]> Thu, 26 Feb 2015 21:52:47 +0100
Modified: trunk/packages/trimmomatic/trunk/debian/install
===================================================================
--- trunk/packages/trimmomatic/trunk/debian/install 2015-02-26 21:16:42 UTC
(rev 18865)
+++ trunk/packages/trimmomatic/trunk/debian/install 2015-02-26 21:25:20 UTC
(rev 18866)
@@ -1,2 +1,2 @@
debian/bin/* usr/bin
-adapters usr/share/trimmomatic
+adapters/* usr/share/trimmomatic
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