This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository python-ruffus.
commit 96753bab54398142c4c3235a99b497970b4ce214 Merge: 14d47ab ac493a8 Author: Andreas Tille <[email protected]> Date: Thu Mar 12 21:50:36 2015 +0100 Merge tag 'upstream/2.6.2+dfsg' Upstream version 2.6.2+dfsg CHANGES.TXT | 78 + PKG-INFO | 2 +- doc/Makefile | 2 +- doc/_build/latex/ruffus.pdf | Bin 4513083 -> 4688129 bytes doc/_templates/index.html | 23 +- doc/_templates/layout.html | 2 +- doc/contents.rst | 3 + doc/decorators/active_if.rst | 2 +- doc/decorators/check_if_uptodate.rst | 1 + doc/decorators/collate.rst | 105 +- doc/decorators/collate_ex.rst | 105 +- doc/decorators/combinations.rst | 239 +- doc/decorators/combinations_with_replacement.rst | 238 +- doc/decorators/files.rst | 6 +- doc/decorators/files_ex.rst | 2 +- doc/decorators/follows.rst | 2 +- doc/decorators/graphviz.rst | 1 + doc/decorators/indicator_objects.rst | 5 +- doc/decorators/jobs_limit.rst | 2 +- doc/decorators/merge.rst | 46 +- doc/decorators/mkdir.rst | 59 +- doc/decorators/originate.rst | 40 +- doc/decorators/parallel.rst | 2 +- doc/decorators/permutations.rst | 232 +- doc/decorators/posttask.rst | 1 + doc/decorators/product.rst | 295 +- doc/decorators/split.rst | 68 +- doc/decorators/subdivide.rst | 45 +- doc/decorators/transform.rst | 72 +- doc/decorators/transform_ex.rst | 136 +- doc/examples/bioinformatics/part2.rst | 2 +- doc/faq.rst | 36 +- doc/global.inc | 11 +- doc/history.rst | 174 +- doc/images/small_logo.png | Bin 0 -> 14521 bytes doc/images/subpipeline_example.png | Bin 0 -> 65279 bytes doc/implementation_notes.rst | 434 +- doc/installation.rst | 61 +- .../example_scripts/play_with_colours.py | 2 +- doc/static_data/example_scripts/simpler.py | 46 +- doc/static_data/ruffus.pdf | Bin 4513083 -> 4688129 bytes doc/static_data/small_logo.png | Bin 0 -> 14521 bytes doc/todo.rst | 226 +- doc/tutorials/new_syntax.rst | 485 ++ doc/tutorials/new_syntax_worked_example.rst | 355 ++ doc/tutorials/new_syntax_worked_example_code.rst | 222 + doc/tutorials/new_tutorial/checkpointing_code.rst | 36 +- .../new_tutorial/flowchart_colours_code.rst | 2 +- doc/tutorials/new_tutorial/parallel.rst | 1 + .../new_tutorial/pipeline_printout_graph.rst | 3 + ruffus/__init__.py | 23 +- ruffus/cmdline.py | 6 +- ruffus/drmaa_wrapper.py | 50 +- ruffus/file_name_parameters.py | 218 +- ruffus/graph.py | 299 +- ruffus/parse_old_style_ruffus.py | 268 + ruffus/print_dependencies.py | 37 +- ruffus/proxy_logger.py | 2 + ruffus/ruffus_exceptions.py | 42 +- ruffus/ruffus_utility.py | 456 +- ruffus/ruffus_version.py | 2 +- ruffus/task.py | 5968 +++++++++++++------- .../auto_generated_pipeline_examples/parallel.py | 4 +- .../auto_generated_pipeline_examples/simple.py | 4 +- .../auto_generated_pipeline_examples/simpler.py | 4 +- .../create_test_script_from_dependency_tree.py | 78 +- ruffus/test/draw_specified_dependency_tree.py | 40 +- ...eptions.py => manual_test_ctrl_c_exceptions.py} | 0 .../test/{test_drmaa.py => manual_test_drmaa.py} | 0 ruffus/test/play_with_colours.py | 2 +- ruffus/test/simpler_at_runtime.py | 253 - ruffus/test/simpler_with_shared_logging.py | 2 +- ruffus/test/test_N_x_M_and_collate.py | 223 +- ruffus/test/test_active_if.py | 165 +- ruffus/test/test_branching_dependencies.py | 392 +- ruffus/test/test_cmdline.py | 47 +- ruffus/test/test_collate.py | 223 +- ruffus/test/test_combinatorics.py | 75 +- ruffus/test/test_empty_files_decorator.py | 184 +- ruffus/test/test_exceptions.py | 69 +- ruffus/test/test_file_name_parameters.py | 387 +- ruffus/test/test_files_decorator.py | 186 +- ruffus/test/test_files_post_merge.py | 299 - ruffus/test/test_filesre_combine.py | 191 +- ruffus/test/test_filesre_split_and_combine.py | 257 +- ruffus/test/test_follows_mkdir.py | 180 +- ruffus/test/test_graphviz.py | 138 +- ..._inputs_with_multiple_args_raising_exception.py | 198 +- ruffus/test/test_job_completion_checksums.py | 404 +- ruffus/test/test_job_history_with_exceptions.py | 170 +- ruffus/test/test_mkdir.py | 66 +- ...inatorics.py => test_newstyle_combinatorics.py} | 306 +- ruffus/test/test_newstyle_proxy.py | 181 + ...es.py => test_newstyle_regex_error_messages.py} | 197 +- ruffus/test/test_pausing.py | 294 +- ruffus/test/test_pipeline_printout_graph.py | 205 + ruffus/test/test_posttask_merge.py | 244 + ruffus/test/test_regex_error_messages.py | 48 +- ruffus/test/test_ruffus_utility.py | 170 +- .../test_ruffus_utility_parse_task_arguments.py | 713 +++ ruffus/test/test_runtime_data.py | 187 + ruffus/test/test_softlink_uptodate.py | 151 +- ruffus/test/test_split_and_combine.py | 287 +- ruffus/test/test_split_regex_and_collate.py | 115 +- ruffus/test/test_split_subdivide_checkpointing.py | 239 + ruffus/test/test_subpipeline.py | 201 + ruffus/test/test_suffix_output_dir.py | 259 + ruffus/test/test_task_file_dependencies.py | 130 +- ruffus/test/test_task_misc.py | 63 +- ruffus/test/test_transform_add_inputs.py | 234 +- ruffus/test/test_transform_inputs.py | 207 +- ruffus/test/test_transform_with_no_re_matches.py | 194 +- ruffus/test/test_tutorial7.py | 137 +- ruffus/test/test_unicode_filenames.py | 185 +- ruffus/test/test_verbosity.py | 137 +- 115 files changed, 13423 insertions(+), 7183 deletions(-) -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/python-ruffus.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
