Author: tille Date: 2015-04-04 08:35:53 +0000 (Sat, 04 Apr 2015) New Revision: 19027
Modified: trunk/packages/rna-star/trunk/debian/changelog trunk/packages/rna-star/trunk/debian/patches/compilationstuff.patch trunk/packages/rna-star/trunk/debian/patches/donotuse_own_htslib.patch Log: New upstream version (adapted patches) Modified: trunk/packages/rna-star/trunk/debian/changelog =================================================================== --- trunk/packages/rna-star/trunk/debian/changelog 2015-04-04 06:50:23 UTC (rev 19026) +++ trunk/packages/rna-star/trunk/debian/changelog 2015-04-04 08:35:53 UTC (rev 19027) @@ -1,8 +1,8 @@ rna-star (2.4.0k-1) UNRELEASED; urgency=medium - * New upstream version + * New upstream version (adapted patches) - -- Andreas Tille <[email protected]> Sat, 04 Apr 2015 08:49:22 +0200 + -- Andreas Tille <[email protected]> Sat, 04 Apr 2015 10:35:14 +0200 rna-star (2.4.0i-1) unstable; urgency=low Modified: trunk/packages/rna-star/trunk/debian/patches/compilationstuff.patch =================================================================== --- trunk/packages/rna-star/trunk/debian/patches/compilationstuff.patch 2015-04-04 06:50:23 UTC (rev 19026) +++ trunk/packages/rna-star/trunk/debian/patches/compilationstuff.patch 2015-04-04 08:35:53 UTC (rev 19027) @@ -56,9 +56,9 @@ --- a/source/STAR.cpp +++ b/source/STAR.cpp -@@ -314,7 +314,7 @@ int main(int argInN, char* argIn[]) { +@@ -331,7 +331,7 @@ int main(int argInN, char* argIn[]) { vector <string> bamBinNamesV; - for (uint32 ibin=0; ibin<RAchunk[0]->chunkOutBAMcoord->nBins; ibin++) { + for (uint32 ibin=0; ibin<nBins; ibin++) { - bamBinNamesV.push_back(P->outBAMsortTmpDir+"/b"+to_string((uint) ibin)); + bamBinNamesV.push_back(P->outBAMsortTmpDir+"/b"+std::to_string((uint) ibin)); Modified: trunk/packages/rna-star/trunk/debian/patches/donotuse_own_htslib.patch =================================================================== --- trunk/packages/rna-star/trunk/debian/patches/donotuse_own_htslib.patch 2015-04-04 06:50:23 UTC (rev 19026) +++ trunk/packages/rna-star/trunk/debian/patches/donotuse_own_htslib.patch 2015-04-04 08:35:53 UTC (rev 19027) @@ -49,7 +49,7 @@ --- a/source/STAR.cpp +++ b/source/STAR.cpp -@@ -22,7 +22,7 @@ +@@ -23,7 +23,7 @@ #include "mapThreadsSpawn.h" #include "ErrorWarning.h" @@ -100,6 +100,6 @@ //external libs -#define SAMTOOLS_BGZF_H "htslib/htslib/bgzf.h" +#define SAMTOOLS_BGZF_H <htslib/bgzf.h> + #define SAMTOOLS_SAM_H "htslib/htslib/sam.h" using namespace std; - _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
