Author: tille
Date: 2015-05-08 15:16:25 +0000 (Fri, 08 May 2015)
New Revision: 19155
Added:
trunk/packages/R/r-other-apmswapp/
trunk/packages/R/r-other-apmswapp/trunk/
trunk/packages/R/r-other-apmswapp/trunk/debian/
trunk/packages/R/r-other-apmswapp/trunk/debian/changelog
trunk/packages/R/r-other-apmswapp/trunk/debian/compat
trunk/packages/R/r-other-apmswapp/trunk/debian/control
trunk/packages/R/r-other-apmswapp/trunk/debian/copyright
trunk/packages/R/r-other-apmswapp/trunk/debian/rules
trunk/packages/R/r-other-apmswapp/trunk/debian/source/
trunk/packages/R/r-other-apmswapp/trunk/debian/source/format
trunk/packages/R/r-other-apmswapp/trunk/debian/upstream/
trunk/packages/R/r-other-apmswapp/trunk/debian/upstream/metadata
trunk/packages/R/r-other-apmswapp/trunk/debian/watch
Log:
Add packaging for r-other-apmswapp (needs more predependencies)
Added: trunk/packages/R/r-other-apmswapp/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-other-apmswapp/trunk/debian/changelog
(rev 0)
+++ trunk/packages/R/r-other-apmswapp/trunk/debian/changelog 2015-05-08
15:16:25 UTC (rev 19155)
@@ -0,0 +1,6 @@
+r-other-apmswapp (1.0-1) UNRELEASED; urgency=low
+
+ * Initial release (Closes: #<bug>)
+ Needs several other r packages: 'genefilter', 'seqinr', 'multtest',
'DESeq', 'aroma.light'
+
+ -- DMPT <[email protected]> Mon, 04 May 2015
10:49:06 +0200
Added: trunk/packages/R/r-other-apmswapp/trunk/debian/compat
===================================================================
--- trunk/packages/R/r-other-apmswapp/trunk/debian/compat
(rev 0)
+++ trunk/packages/R/r-other-apmswapp/trunk/debian/compat 2015-05-08
15:16:25 UTC (rev 19155)
@@ -0,0 +1 @@
+9
Added: trunk/packages/R/r-other-apmswapp/trunk/debian/control
===================================================================
--- trunk/packages/R/r-other-apmswapp/trunk/debian/control
(rev 0)
+++ trunk/packages/R/r-other-apmswapp/trunk/debian/control 2015-05-08
15:16:25 UTC (rev 19155)
@@ -0,0 +1,30 @@
+Source: r-other-apmswapp
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team
<[email protected]>
+Uploaders: Andreas Tille <[email protected]>
+Build-Depends: debhelper (>= 9),
+ cdbs,
+ r-base-dev,
+ r-cran-gtools,
+ r-bioc-edger,
+ r-bioc-limma
+Standards-Version: 3.9.6
+Vcs-Browser:
http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-other-apmswapp/trunk/
+Vcs-Svn:
svn://anonscm.debian.org/debian-med/trunk/packages/R/r-other-apmswapp/trunk/
+Homepage: http://sourceforge.net/projects/apmswapp/
+
+Package: r-other-apmswapp
+Architecture: any
+Depends: ${misc:Depends},
+ r-cran-gtools,
+ r-bioc-edger,
+ r-bioc-limma
+Description: GNU R Pre- and Postprocessing For Affinity Purification Mass
Spectrometry
+ The reliable detection of protein-protein-interactions by affinity
+ purification mass spectrometry (AP-MS) is a crucial stepping stone for
+ the understanding of biological processes. The main challenge in a
+ typical AP-MS experiment is to separate true interaction proteins from
+ contaminants by contrasting counts of proteins binding to specific baits
+ with counts of negative controls.
+
Added: trunk/packages/R/r-other-apmswapp/trunk/debian/copyright
===================================================================
--- trunk/packages/R/r-other-apmswapp/trunk/debian/copyright
(rev 0)
+++ trunk/packages/R/r-other-apmswapp/trunk/debian/copyright 2015-05-08
15:16:25 UTC (rev 19155)
@@ -0,0 +1,11 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: Martina Fischer <[email protected]>
+Source: http://sourceforge.net/projects/apmswapp/files/
+
+Files: *
+Copyright: 2013-2014 Martina Fischer <[email protected]>
+License: <license>
+
+Files: debian/*
+Copyright: 2015 Andreas Tille <[email protected]>
+License: <license>
Added: trunk/packages/R/r-other-apmswapp/trunk/debian/rules
===================================================================
--- trunk/packages/R/r-other-apmswapp/trunk/debian/rules
(rev 0)
+++ trunk/packages/R/r-other-apmswapp/trunk/debian/rules 2015-05-08
15:16:25 UTC (rev 19155)
@@ -0,0 +1,4 @@
+#!/usr/bin/make -f
+
+debRreposname := other
+include /usr/share/R/debian/r-cran.mk
Property changes on: trunk/packages/R/r-other-apmswapp/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
+ *
Added: trunk/packages/R/r-other-apmswapp/trunk/debian/source/format
===================================================================
--- trunk/packages/R/r-other-apmswapp/trunk/debian/source/format
(rev 0)
+++ trunk/packages/R/r-other-apmswapp/trunk/debian/source/format
2015-05-08 15:16:25 UTC (rev 19155)
@@ -0,0 +1 @@
+3.0 (quilt)
Added: trunk/packages/R/r-other-apmswapp/trunk/debian/upstream/metadata
===================================================================
--- trunk/packages/R/r-other-apmswapp/trunk/debian/upstream/metadata
(rev 0)
+++ trunk/packages/R/r-other-apmswapp/trunk/debian/upstream/metadata
2015-05-08 15:16:25 UTC (rev 19155)
@@ -0,0 +1,11 @@
+Reference:
+ Author: Martina Fischer and Susann Zilkenat and Roman G. Gerlach and Samuel
Wagner and Bernhard Y. Renard
+ Title: "Pre- and post-processing workflow for affinity purification mass
spectrometry data"
+ Journal: Journal of Proteome Research
+ Year: 2014
+ Volume: 13
+ Number: 5
+ Pages: 2239-49
+ DOI: 10.1021/pr401249b
+ PMID: 24641689
+ URL: http://pubs.acs.org/doi/abs/10.1021/pr401249b
Added: trunk/packages/R/r-other-apmswapp/trunk/debian/watch
===================================================================
--- trunk/packages/R/r-other-apmswapp/trunk/debian/watch
(rev 0)
+++ trunk/packages/R/r-other-apmswapp/trunk/debian/watch 2015-05-08
15:16:25 UTC (rev 19155)
@@ -0,0 +1,3 @@
+version=3
+
+http://sf.net/apmswapp/apmsWAPP_(\d[\d\.]+)\.(?:tgz|tbz|txz|(?:tar\.(?:gz|bz2|xz)))
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