Author: tille Date: 2015-05-09 06:36:05 +0000 (Sat, 09 May 2015) New Revision: 19165
Added: trunk/packages/R/r-bioc-snpstats/trunk/debian/patches/ trunk/packages/R/r-bioc-snpstats/trunk/debian/patches/series trunk/packages/R/r-bioc-snpstats/trunk/debian/patches/use_debian_packaged_zlib.patch Modified: trunk/packages/R/r-bioc-snpstats/trunk/debian/changelog trunk/packages/R/r-bioc-snpstats/trunk/debian/control trunk/packages/R/r-bioc-snpstats/trunk/debian/copyright Log: Commit 1.16.0+dfsg-1 as uploaded to experimental Modified: trunk/packages/R/r-bioc-snpstats/trunk/debian/changelog =================================================================== --- trunk/packages/R/r-bioc-snpstats/trunk/debian/changelog 2015-05-09 06:28:03 UTC (rev 19164) +++ trunk/packages/R/r-bioc-snpstats/trunk/debian/changelog 2015-05-09 06:36:05 UTC (rev 19165) @@ -1,3 +1,11 @@ +r-bioc-snpstats (1.16.0+dfsg-1) experimental; urgency=medium + + * New upstream version + * cme fix dpkg-control + * debian/copyright: Upstream has dropped code copies + + -- Andreas Tille <[email protected]> Mon, 20 Oct 2014 08:44:55 +0200 + r-bioc-snpstats (1.14.0+dfsg-1) unstable; urgency=medium * Initial release (closes: #756003) Modified: trunk/packages/R/r-bioc-snpstats/trunk/debian/control =================================================================== --- trunk/packages/R/r-bioc-snpstats/trunk/debian/control 2015-05-09 06:28:03 UTC (rev 19164) +++ trunk/packages/R/r-bioc-snpstats/trunk/debian/control 2015-05-09 06:36:05 UTC (rev 19165) @@ -2,16 +2,16 @@ Maintainer: Debian Med Packaging Team <[email protected]> Uploaders: Andreas Tille <[email protected]> Section: gnu-r +Testsuite: autopkgtest Priority: optional -Testsuite: autopkgtest Build-Depends: debhelper (>= 9), cdbs, r-base-dev, r-cran-survival, r-cran-matrix, - r-bioc-biocgenerics, + r-bioc-biocgenerics (>= 0.12.0), zlib1g-dev -Standards-Version: 3.9.5 +Standards-Version: 3.9.6 Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-snpstats/trunk/ Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-snpstats/trunk/ Homepage: http://bioconductor.org/packages/release/bioc/html/snpStats.html @@ -23,7 +23,7 @@ ${shlibs:Depends}, r-cran-survival, r-cran-matrix, - r-bioc-biocgenerics + r-bioc-biocgenerics (>= 0.12.0) Description: BioConductor SnpMatrix and XSnpMatrix classes and methods This BioConductor package provides R functions to work with SnpMatrix and XSnpMatrix classes and methods. Modified: trunk/packages/R/r-bioc-snpstats/trunk/debian/copyright =================================================================== --- trunk/packages/R/r-bioc-snpstats/trunk/debian/copyright 2015-05-09 06:28:03 UTC (rev 19164) +++ trunk/packages/R/r-bioc-snpstats/trunk/debian/copyright 2015-05-09 06:36:05 UTC (rev 19165) @@ -2,32 +2,12 @@ Upstream-Name: snpStats Upstream-Contact: David Clayton <[email protected]> Source: http://bioconductor.org/packages/release/bioc/html/snpStats.html -Files-Excluded: src/adler32.c - src/compress.c - src/crc32.c - src/crc32.h - src/deflate.c +Files-Excluded: src/crc32.h src/deflate.h - src/gzclose.c - src/gzguts.h - src/gzlib.c - src/gzread.c - src/gzwrite.c - src/infback.c - src/inffast.c src/inffast.h src/inffixed.h - src/inflate.c src/inflate.h - src/inftrees.c src/inftrees.h - src/trees.c - src/trees.h - src/uncompr.c - src/zconf.h - src/zlib.h - src/zutil.c - src/zutil.h Files: * Copyright: 2006-2014 David Clayton <[email protected]> Added: trunk/packages/R/r-bioc-snpstats/trunk/debian/patches/series =================================================================== --- trunk/packages/R/r-bioc-snpstats/trunk/debian/patches/series (rev 0) +++ trunk/packages/R/r-bioc-snpstats/trunk/debian/patches/series 2015-05-09 06:36:05 UTC (rev 19165) @@ -0,0 +1 @@ +use_debian_packaged_zlib.patch Added: trunk/packages/R/r-bioc-snpstats/trunk/debian/patches/use_debian_packaged_zlib.patch =================================================================== --- trunk/packages/R/r-bioc-snpstats/trunk/debian/patches/use_debian_packaged_zlib.patch (rev 0) +++ trunk/packages/R/r-bioc-snpstats/trunk/debian/patches/use_debian_packaged_zlib.patch 2015-05-09 06:36:05 UTC (rev 19165) @@ -0,0 +1,26 @@ +Author: Andreas Tille <[email protected]> +Last-Update: Mon, 20 Oct 2014 17:41:51 +0200 +Description: If the systems includes zlib natively there is no point in + requiring the import of zlibbioc + + +--- a/DESCRIPTION ++++ b/DESCRIPTION +@@ -6,7 +6,7 @@ Author: David Clayton <[email protected]> + Description: Classes and statistical methods for large SNP association studies, extending the snpMatrix package + Maintainer: David Clayton <[email protected]> + Depends: R(>= 2.10.0), survival, Matrix, methods +-Imports: graphics, grDevices, stats, utils, BiocGenerics, zlibbioc ++Imports: graphics, grDevices, stats, utils, BiocGenerics + Suggests: hexbin + License: GPL-3 + Collate: ss.R contingency.table.R convert.R compare.R glm-test.R +--- a/NAMESPACE ++++ b/NAMESPACE +@@ -1,6 +1,5 @@ + useDynLib("snpStats") + import(methods) +-import(zlibbioc) + importFrom(graphics, abline, axis, barplot, legend, mtext, par, plot, + points, polygon) + importFrom(grDevices, heat.colors) _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
