Author: tille Date: 2015-06-23 17:01:06 +0000 (Tue, 23 Jun 2015) New Revision: 19361
Added: trunk/packages/sickle/trunk/debian/watch Modified: trunk/packages/sickle/trunk/debian/changelog trunk/packages/sickle/trunk/debian/control trunk/packages/sickle/trunk/debian/copyright trunk/packages/sickle/trunk/debian/patches/makefile_ldflags Log: Take over to Debian Med team maintenance; adapted to new upstream version Modified: trunk/packages/sickle/trunk/debian/changelog =================================================================== --- trunk/packages/sickle/trunk/debian/changelog 2015-06-23 16:51:25 UTC (rev 19360) +++ trunk/packages/sickle/trunk/debian/changelog 2015-06-23 17:01:06 UTC (rev 19361) @@ -1,3 +1,9 @@ +sickle (1.33-1) UNRELEASED; urgency=medium + + * Initial upload to Debian (Closes: #???) + + -- Andreas Tille <[email protected]> Tue, 23 Jun 2015 18:53:25 +0200 + sickle (0.94-1biolinux1.1) trusty; urgency=low * Rebuild for Trusty Modified: trunk/packages/sickle/trunk/debian/control =================================================================== --- trunk/packages/sickle/trunk/debian/control 2015-06-23 16:51:25 UTC (rev 19360) +++ trunk/packages/sickle/trunk/debian/control 2015-06-23 17:01:06 UTC (rev 19361) @@ -1,14 +1,21 @@ Source: sickle +Maintainer: Debian Med Packaging Team <[email protected]> +Uploaders: Andreas Tille <[email protected]>, + Tim Booth <[email protected]> Section: science Priority: optional -Maintainer: Tim Booth <[email protected]> -Build-Depends: zlib1g-dev, help2man (>= 1.40.4), debhelper (>= 9) -Standards-Version: 3.9.3 +Build-Depends: zlib1g-dev, + help2man (>= 1.40.4), + debhelper (>= 9) +Standards-Version: 3.9.6 +Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/sickle/trunk/ +Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/sickle/trunk/ Homepage: https://github.com/vsbuffalo/sickle Package: sickle Architecture: any -Depends: ${shlibs:Depends}, ${misc:Depends} +Depends: ${shlibs:Depends}, + ${misc:Depends} Description: windowed adaptive trimming tool for FASTQ files using quality Most modern sequencing technologies produce reads that have deteriorating quality towards the 3'-end. Incorrectly called bases here negatively impact Modified: trunk/packages/sickle/trunk/debian/copyright =================================================================== --- trunk/packages/sickle/trunk/debian/copyright 2015-06-23 16:51:25 UTC (rev 19360) +++ trunk/packages/sickle/trunk/debian/copyright 2015-06-23 17:01:06 UTC (rev 19361) @@ -1,11 +1,17 @@ Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Source: https://github.com/vsbuffalo/sickle/archive/master.zip -License: MIT Files: * -Copyright: © 2008 Genome Research Ltd (GRL)., +Copyright: 2008 Genome Research Ltd (GRL)., © 2012 - Vince Buffalo License: MIT + +Files: debian/* +Copyright: 2013-2014 Tim Booth <[email protected]> + 2015 Andreas Tille <[email protected]> +License: MIT + +License: MIT Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without @@ -25,3 +31,4 @@ ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + Modified: trunk/packages/sickle/trunk/debian/patches/makefile_ldflags =================================================================== --- trunk/packages/sickle/trunk/debian/patches/makefile_ldflags 2015-06-23 16:51:25 UTC (rev 19360) +++ trunk/packages/sickle/trunk/debian/patches/makefile_ldflags 2015-06-23 17:01:06 UTC (rev 19361) @@ -1,20 +1,19 @@ +Author: Tim Booth <[email protected]> +Last-Update: Tue, 23 Jun 2015 18:53:25 +0200 +Description: Propagate build flags + --- a/Makefile +++ b/Makefile -@@ -1,7 +1,7 @@ +@@ -1,11 +1,10 @@ PROGRAM_NAME = sickle - VERSION = 0.94 + VERSION = 1.33 CC = gcc -CFLAGS = -Wall -pedantic -DVERSION=$(VERSION) +CFLAGS += -Wall -pedantic -DVERSION=$(VERSION) DEBUG = -g OPT = -O3 ARCHIVE = $(PROGRAM_NAME)_$(VERSION) -@@ -34,7 +34,7 @@ - tar -zcf $(ARCHIVE).tar.gz src Makefile +-LDFLAGS= + LIBS = -lz + SDIR = src - build: sliding.o trim_single.o trim_paired.o sickle.o -- $(CC) $(CFLAGS) $(LDFLAGS) $(OPT) $? -o sickle -+ $(CC) $(CFLAGS) $(OPT) $? -o sickle $(LDFLAGS) - - debug: - $(MAKE) build "CFLAGS=-Wall -pedantic -g -DDEBUG" Added: trunk/packages/sickle/trunk/debian/watch =================================================================== --- trunk/packages/sickle/trunk/debian/watch (rev 0) +++ trunk/packages/sickle/trunk/debian/watch 2015-06-23 17:01:06 UTC (rev 19361) @@ -0,0 +1,3 @@ +version=3 + +https://github.com/najoshi/sickle/releases .*/archive/v(\d[\d.-]+)\.(?:tar(?:\.gz|\.bz2)?|tgz) _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
