Author: tille
Date: 2015-07-04 12:25:25 +0000 (Sat, 04 Jul 2015)
New Revision: 19504
Modified:
trunk/packages/plink/trunk/debian/NEWS.Debian
trunk/packages/plink/trunk/debian/changelog
trunk/packages/plink/trunk/debian/control
trunk/packages/plink/trunk/debian/docs
Log:
Upload to unstable incorporating the name space saving feature of med-config
Modified: trunk/packages/plink/trunk/debian/NEWS.Debian
===================================================================
--- trunk/packages/plink/trunk/debian/NEWS.Debian 2015-07-04 10:16:45 UTC
(rev 19503)
+++ trunk/packages/plink/trunk/debian/NEWS.Debian 2015-07-04 12:25:25 UTC
(rev 19504)
@@ -1,35 +1,27 @@
-Name conflict with plink1, plink1.9, plink2 and plink from ssh clone putty
-=============================================
+plink (1.07-6) unstable; urgency=medium
-We are facing a name clash in the Free Software universe and we have
-to circumvent. To summarize, we have:
+ Due to a name conflict with /usr/bin/plink from ssh clone putty
+ the main executable needs to be renamed. This plink package
+ provides the binaries:
+
+ /usr/bin/p-link
+ /usr/bin/plink1
- 1. The plink1 executable
- /usr/lib/debian-med/bin/plink
- 1.1 A symbolic link to the plink1 executable
- /usr/bin/plink1
- /usr/bin/p-link
- /usr/lib/plink/plink
+ To remain compatible with local user scripts using the name plink
+ the real executable is provided under the PATH
+
+ /usr/lib/debian-med/bin/plink
- 2. The plink1.9 executable
- /usr/lib/debian-med/bin/plink1.9
- 2.1 A symbolic link to the plink1.9 executable
- /usr/bin/plink1.9
+ So if you want to use plink1 with its original name just do the
+ following: Set the PATH variable like
- 3. The plink2 executable
- /usr/lib/debian-med/bin/plink2
- 3.1 A symbolic link to the plink2 executable
- /usr/bin/plink2
+ export PATH=/usr/lib/debian-med/bin:$PATH
- 4. The plink executable (from putty)
- /usr/bin/plink
+ The PATH can be set very easily by making use of the feature of
+ the med-config package of the Debian Med Blend. Once med-config
+ is installed for Bash users who create a file ${HOME}/.blends
+ containing the string "debian-med" the PATH is automatically
+ extended and thus users who consider themselves Debian Med users
+ have access to the originally named executables.
-So if you want to use plink1 with its original name just do the
-following: Set the PATH variable like
-
- export PATH=/usr/lib/debian-med/bin:$PATH
-
-This makes sure that scripts you are using will find the correct plink
executable.
-
- -- Andreas Tille <[email protected]> Tue, 31 Mar 2009 22:28:25 +0200
- -- Dylan Aïssi <[email protected]> Thu, 22 Jan 2015 08:00:59 +0100
+ -- Andreas Tille <[email protected]> Sat, 04 Jul 2015 13:33:17 +0200
Modified: trunk/packages/plink/trunk/debian/changelog
===================================================================
--- trunk/packages/plink/trunk/debian/changelog 2015-07-04 10:16:45 UTC (rev
19503)
+++ trunk/packages/plink/trunk/debian/changelog 2015-07-04 12:25:25 UTC (rev
19504)
@@ -1,3 +1,10 @@
+plink (1.07-6) unstable; urgency=medium
+
+ * Recommends: med-config (>= 2.1)
+ * Update NEWS.Debian and install this file
+
+ -- Andreas Tille <[email protected]> Sat, 04 Jul 2015 13:44:46 +0200
+
plink (1.07-5) experimental; urgency=medium
* Also create a manpage in Debian Med name space
Modified: trunk/packages/plink/trunk/debian/control
===================================================================
--- trunk/packages/plink/trunk/debian/control 2015-07-04 10:16:45 UTC (rev
19503)
+++ trunk/packages/plink/trunk/debian/control 2015-07-04 12:25:25 UTC (rev
19504)
@@ -1,13 +1,14 @@
Source: plink
-Section: science
-Priority: optional
Maintainer: Debian Med Packaging Team
<[email protected]>
Uploaders: Steffen Moeller <[email protected]>,
- Andreas Tille <[email protected]>,
- Charles Plessy <[email protected]>,
- Dylan Aïssi <[email protected]>
-Build-Depends: debhelper (>= 9), zlib1g-dev
+ Andreas Tille <[email protected]>,
+ Charles Plessy <[email protected]>,
+ Dylan Aïssi <[email protected]>
+Section: science
Testsuite: autopkgtest
+Priority: optional
+Build-Depends: debhelper (>= 9),
+ zlib1g-dev
Standards-Version: 3.9.6
Vcs-Browser:
http://anonscm.debian.org/viewvc/debian-med/trunk/packages/plink/trunk/
Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/plink/trunk/
@@ -15,7 +16,9 @@
Package: plink
Architecture: any
-Depends: ${shlibs:Depends}, ${misc:Depends}
+Depends: ${shlibs:Depends},
+ ${misc:Depends}
+Recommends: med-config (>= 2.1)
Description: whole-genome association analysis toolset
plink expects as input the data from SNP (single
nucleotide polymorphism) chips of many individuals
Modified: trunk/packages/plink/trunk/debian/docs
===================================================================
--- trunk/packages/plink/trunk/debian/docs 2015-07-04 10:16:45 UTC (rev
19503)
+++ trunk/packages/plink/trunk/debian/docs 2015-07-04 12:25:25 UTC (rev
19504)
@@ -1 +1,2 @@
README.txt
+debian/NEWS.Debian
\ No newline at end of file
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