This is an automated email from the git hooks/post-receive script.
tille pushed a change to branch master
in repository seqan.
at 069ce1b Moved to Git
This branch includes the following new commits:
new 4d8a1be import seqan
new 34a29df Upstream tarball location changed; here I propose new
watch and get-orig-source facilities.
new bfffc6e Added a BibTeX reference, see
‘http://wiki.debian.org/DebianScience/References’.
new 5feb04e finally a new upstream...
new 17111fd restructure to svn repo layout
new 7102bcd build apps and add man pages
new 361ef57 polish copyright
new 27169ee install manpages and fix synopsis
new c642dcb s/Debian-Med/Debian Med
new 5721201 Collected various informations in
‘debian/upstream-metadata.yaml’.
new 3f18b75 Improved one-line description of seqan (no leading
article, adding "biological")
new 639e381 Fetch also upstream RC candidates in watch file, update
packaging standards (policy,debhelper,source format)
new 620545e Compress the source with xz (this saves three megabytes).
new 3bff2b3 Corrected Vcs URLs.
new 2416e34 New upstream release available.
new f124b9a Build according to upstream's instructions, and avoid
programs with generic names in /usr/bin.
new 43b5f74 Use Debhelper 8.
new 1466eef Incremented Standards-Version after reading Policy's
upgrade checklist.
new d035cb2 Compress binary packages with xz.
new 0dd4547 Build with the cmake class of CDBS.
new f9bb2cf Converted debian/copyright to machine-readable format.
new 68c484e Investigating the diff between 1.2 and 1.3; found a
convenience copy of SAMtools.
new a224bb5 Removed convenience code copy of SAMtools to prevent
accidental use at build time.
new 4aae536 Patch to correct path to SAMtools headers in Debian.
new 70c386f Depend on zlib1g-dev, as seqan needs to detect zlib to
set SEQAN_HAS_SAMTOOLS to 1.
new e99c665 Depend on libboost-dev as Cmake was looking for it.
new 8a2df4c Finished to check the debdiff, and formatted with
config-edit.
new 9230b11 Set Priority to optional and sequan-apps’s Section to
science.
new ff3d556 Uploaded.
new 23f6897 Renamed debian/upstream-metadata.yaml to debian/upstream.
new c147775 debian/upstream: Moved DOI and PMID to the Reference
namespace.
new 99d228e Upstream has changed method to release archives => Fix
watch file; some fixes to orig-tar.sh
new e0e995f Bumped standards-version
new b7cd11b Rely more on debhelper files to simplify debian/rules;
make sure package builds twice in a row; tried to switch from cdbs to dh but
failed (left the changes as comments); TODO: Find a way to call cmake with the
right options using dh
new a48d869 Add doc-base control file; shamelessly give up to
convince cdbs to do what's claimed in the doc and leave two lintian warnings
about useless LICENSE files. Any volunteer to kick cdbs into ... hmmm, where
it needs to be kicked ...
new 0a5e433 Normalised citation information
new dcdfcaa Fixed watch file
new 1c290f1 debian/orig-tar.sh: Removed because the removed file is
not part of the source any more
new 0ecbe52 Mass commit my current changes to seqan; Attention: I can
not test the build since it needs more memory than my current Build machine
new ca75301 Droping -fstack-protector flag helps **drastically**
reducing memory consumption when building the package!!!!
new 442eb24 Building docs works now; uncomment parts of dh_install to
proceed somehow for the moment
new 1a45fdc Fix installation of demos. Seems we need some additional
package seqan-extras and when reading the doc Magnus pointed out
http://trac.seqan.de/wiki/BuildManual/UsingTheSeqAnBuildSystem razers3 might
deserve a further additional package ... checking this out now
new 54d6bd2 Doing a bit of reorganisation how files are installed;
create manpages automatically using help2man
new cc76f74 Close "new upstream" bug, no zero length manpages
new 298d4c0 Add python to Build-Depends - seems to be ready for upload
new b11cdde Need to rename /usr/bin/join to /usr/bin/seqan-join to
avoid name clash with coreutils --> this needs to be discussed with upstream!
new e115412 Make sure only needed exectuables will be installed as
links in /usr/bin and document this in README.Debian; manpages (via help2man)
only for binaries in /usr/bin
new da21bdc UPstream source is not yet uploaded but this watch file
seems a bit better in catching it
new e4691c7 Fix common typo: sequan -> seqan
new f1d185c Add hint to add /usr/lib/seqan/bin to PATH variable
new d6f5521 Upload to unstable
new ac41930 Rename /usr/bin/mason to /usr/bin/seqan_mason
new 3520a1e Upload to unstable
new 023b16a Run test suite only on powerfull architectures (amd64) at
build time
new 6c9a1f5 Deal with arch-dep builds but mention that the test suite
issue is not yet solved
new b365959 deacticate test for apps splazers
new 339f82e Exclude three test that are failing according to a hint
of upstream
new a13de08 Try to build 32bit arches without O2 optimisation
new 5675d10 Move debian/upstream to debian/upstream/metadata
new bb7c826 Exclude unused compressed JS code
new c2ed79c Upload to unstable
new cca59b9 Do proper manipulation of build options
new c0dde10 New upstream version
new 0eb457f cme fix dpkg-control
new 5f7813b Lets see whether we really need to skip these tests (and
than adapt the patch as needed)
new d3d78c3 disable doc creation which works differently than in
previous versions
new fa12582 correct opts in d/watch
new 17fe800 Upgrade copyright
new 43a2284 New Build-Depends: python-jinja2 needed in test suite
new b8deb19 Further Build-Depends: libbz2-dev, python-sphinx,
python-nose, default-jdk
new c75926e Enable parallel builds
new 5daeb7d For the moment ignore errors in tests. The problems need
to be investigated separately and we want to see some package to enable deeper
inspection
new 9d13b05 Remove some minimised JS scripts without source which are
packaged for Debian
new 952c3e0 Fix location of include files, docs are somewhere else
and should be moved to a separate package
new 6313230 New package seqan-doc; Attention: the link targets of
dh-linktrees are random wild guesses and need to be fixed most probably. They
were just injected as placeholders for the removed JS files and are pointing to
the assumed location guessed from the location in the source tarball
new 2bde027 The dix is now named dox instead of docs - but it is
empty anyway. Just let the package build for the moment.
new d67dea9 Imported Upstream version 1.4.1+dfsg
new cfaf4bb Merge tag 'upstream/1.4.1+dfsg'
new 7330c18 Re-add files present in original svn2git but vanished
after gbp import-orig (well known issue)
new e8d90b2 Imported Upstream version 2.0.0+dfsg
new fdf01f1 Merge tag 'upstream/2.0.0+dfsg'
new 069ce1b Moved to Git
The 82 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
--
Alioth's /usr/local/bin/git-commit-notice on
/srv/git.debian.org/git/debian-med/seqan.git
_______________________________________________
debian-med-commit mailing list
[email protected]
http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
