Author: tille Date: 2015-07-17 21:29:44 +0000 (Fri, 17 Jul 2015) New Revision: 19635
Modified: trunk/packages/R/r-bioc-variantannotation/trunk/debian/changelog trunk/packages/R/r-bioc-variantannotation/trunk/debian/patches/drop_tests_requiring_large_data_sets.patch Log: New upstream version Modified: trunk/packages/R/r-bioc-variantannotation/trunk/debian/changelog =================================================================== --- trunk/packages/R/r-bioc-variantannotation/trunk/debian/changelog 2015-07-17 21:18:13 UTC (rev 19634) +++ trunk/packages/R/r-bioc-variantannotation/trunk/debian/changelog 2015-07-17 21:29:44 UTC (rev 19635) @@ -1,3 +1,9 @@ +r-bioc-variantannotation (1.14.6-1) unstable; urgency=medium + + * New upstream version + + -- Andreas Tille <[email protected]> Fri, 17 Jul 2015 23:24:42 +0200 + r-bioc-variantannotation (1.14.4-1) unstable; urgency=medium * New upstream version Modified: trunk/packages/R/r-bioc-variantannotation/trunk/debian/patches/drop_tests_requiring_large_data_sets.patch =================================================================== --- trunk/packages/R/r-bioc-variantannotation/trunk/debian/patches/drop_tests_requiring_large_data_sets.patch 2015-07-17 21:18:13 UTC (rev 19634) +++ trunk/packages/R/r-bioc-variantannotation/trunk/debian/patches/drop_tests_requiring_large_data_sets.patch 2015-07-17 21:29:44 UTC (rev 19635) @@ -205,7 +205,7 @@ -} --- a/inst/unitTests/test_predictCoding-methods.R +++ /dev/null -@@ -1,110 +0,0 @@ +@@ -1,111 +0,0 @@ -quiet <- suppressWarnings -library(BSgenome.Hsapiens.UCSC.hg19) -fun <- VariantAnnotation:::.predictCodingGRangesList @@ -248,7 +248,8 @@ - query <- GRanges("chr1", IRanges(rep(10101, 2), width=c(2,3)), - variant=variant) - current <- quiet(fun(query, cdsbytx[1:2], Hsapiens, variant)) -- checkIdentical(as.character(mcols(current)$VARCODON), c("", "TTCCGG")) +- checkIdentical(as.character(mcols(current)$VARCODON), +- c("TATCCGG", "TTCCGG")) -} - -test_mapToTranscripts <- function() _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
