This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository python-skbio.
commit 60db584714364ff2060b9b744b3ef008459e4b8c Author: Andreas Tille <[email protected]> Date: Wed Jul 29 15:06:40 2015 +0000 Inject python-skbio as per BioLinux + some enhancements (including renaming source package from skbio to python-skbio) --- debian/changelog | 12 +++++++++++ debian/compat | 1 + debian/control | 51 ++++++++++++++++++++++++++++++++++++++++++++ debian/copyright | 39 +++++++++++++++++++++++++++++++++ debian/python-skbio.install | 1 + debian/python3-skbio.install | 1 + debian/rules | 24 +++++++++++++++++++++ debian/source/format | 1 + debian/watch | 2 ++ 9 files changed, 132 insertions(+) diff --git a/debian/changelog b/debian/changelog new file mode 100644 index 0000000..7e014fe --- /dev/null +++ b/debian/changelog @@ -0,0 +1,12 @@ +python-skbio (0.2.3-1) UNRELEASED; urgency=medium + + * Initial upload to Debian (Closes: #???) + + -- Andreas Tille <[email protected]> Wed, 29 Jul 2015 17:02:03 +0200 + +skbio (0.2.3-0biolinux2) trusty; urgency=medium + + * Initial release for QIIME 1.9.0 + * Note that this build does include compiled code and so must be arch=any + + -- Tim Booth <[email protected]> Mon, 23 Feb 2015 17:46:31 +0000 diff --git a/debian/compat b/debian/compat new file mode 100644 index 0000000..ec63514 --- /dev/null +++ b/debian/compat @@ -0,0 +1 @@ +9 diff --git a/debian/control b/debian/control new file mode 100644 index 0000000..fd7af36 --- /dev/null +++ b/debian/control @@ -0,0 +1,51 @@ +Source: python-skbio +Maintainer: Debian Med Packaging Team <[email protected]> +Uploaders: Tim Booth <[email protected]>, + Andreas Tille <[email protected]> +Section: python +Priority: optional +Build-Depends: debhelper (>= 9), + python-all (>= 2.7), + python-support, + python3, + dh-python, + python-dev, + python3-dev, + python-setuptools, + python3-setuptools, + python-numpy, + python3-numpy, + python-natsort, + python3-natsort, + python-pandas, + python3-pandas, + python-matplotlib, + python3-matplotlib, + python-scipy, + python3-scipy +Standards-Version: 3.9.6 +Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/python-skbio/trunk/ +Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/python-skbio/trunk/ +Homepage: https://github.com/biocore/scikit-bio + +Package: python-skbio +Architecture: any +Depends: ${shlibs:Depends}, + ${misc:Depends}, + ${python:Depends} +Description: Python data structures, algorithms, educational resources for bioinformatics + scikit-bio is an open-source, BSD-licensed, python package providing data + structures, algorithms, and educational resources for bioinformatics. + . + It is used as a dependency by various projects including QIIME + +Package: python3-skbio +Architecture: any +Depends: ${shlibs:Depends}, + ${misc:Depends}, + ${python3:Depends} +Description: Python3 data structures, algorithms, educational resources for bioinformatic + scikit-bio is an open-source, BSD-licensed, python package providing data + structures, algorithms, and educational resources for bioinformatics. + . + This is the package for Python3 diff --git a/debian/copyright b/debian/copyright new file mode 100644 index 0000000..e601bbd --- /dev/null +++ b/debian/copyright @@ -0,0 +1,39 @@ +Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Upstream-Name: scikit-bio +Upstream-Contact: [email protected] +Source: https://github.com/biocore/scikit-bio + +Files: * +Copyright: 2013-2015 scikit-bio development team. +License: BSD-3-clause + +Files: debian/* +Copyright: 2015 Tim Booth <[email protected]> + Andreas Tille <[email protected]> +License: BSD-3-clause + +License: BSD-3-clause + Redistribution and use in source and binary forms, with or without modification, + are permitted provided that the following conditions are met: + . + * Redistributions of source code must retain the above copyright notice, this + list of conditions and the following disclaimer. + . + * Redistributions in binary form must reproduce the above copyright notice, this + list of conditions and the following disclaimer in the documentation and/or + other materials provided with the distribution. + . + * Neither the names scikit-bio, skbio, or biocore nor the names of its + contributors may be used to endorse or promote products derived from + this software without specific prior written permission. + . + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND + ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED + WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE + DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR + ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES + (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON + ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT + (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS + SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. diff --git a/debian/python-skbio.install b/debian/python-skbio.install new file mode 100644 index 0000000..dbdb301 --- /dev/null +++ b/debian/python-skbio.install @@ -0,0 +1 @@ +/usr/lib/python2* diff --git a/debian/python3-skbio.install b/debian/python3-skbio.install new file mode 100644 index 0000000..fef6392 --- /dev/null +++ b/debian/python3-skbio.install @@ -0,0 +1 @@ +/usr/lib/python3* diff --git a/debian/rules b/debian/rules new file mode 100755 index 0000000..e5d7206 --- /dev/null +++ b/debian/rules @@ -0,0 +1,24 @@ +#!/usr/bin/make -f +# -*- makefile -*- + +# Uncomment this to turn on verbose mode. +#export DH_VERBOSE=1 + +PKG := $(shell dpkg-parsechangelog | sed -n 's/^Source: //p') + +%: + dh $@ --with python2,python3 --buildsystem=pybuild + +override_dh_auto_test: + #Loads of failures at this point. + dh_auto_test || true + +override_dh_install: + # Do this after running the tests + find debian/tmp/usr -name tests -prune -exec rm -rf '{}' ';' + dh_install + +override_dh_clean: + dh_clean + rm -f .t* .c* + find ./skbio -name '*.so' -delete diff --git a/debian/source/format b/debian/source/format new file mode 100644 index 0000000..163aaf8 --- /dev/null +++ b/debian/source/format @@ -0,0 +1 @@ +3.0 (quilt) diff --git a/debian/watch b/debian/watch new file mode 100644 index 0000000..89280e3 --- /dev/null +++ b/debian/watch @@ -0,0 +1,2 @@ +version=3 +https://github.com/biocore/scikit-bio/releases .*/scikit-bio/archive/([.0-9]+)\.tar\.gz -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/python-skbio.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
