This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository python-pyvcf.
commit 264d74922cb6fe4e8bbabf71d16ae99f3ba3226c Author: Andreas Tille <[email protected]> Date: Wed Oct 14 14:56:12 2015 +0200 Move the binary scripts into a separate binary package --- debian/control | 26 ++++++++++++++++++++++++-- debian/rules | 6 ++++++ 2 files changed, 30 insertions(+), 2 deletions(-) diff --git a/debian/control b/debian/control index 6f1e088..c6d3566 100644 --- a/debian/control +++ b/debian/control @@ -60,10 +60,32 @@ Description: Variant Call Format (VCF) parser for Python 3 . This package provides the Python 3 modules. -Package: python-pyvcf-examples +Package: pyvcf Architecture: all Depends: ${misc:Depends}, - ${python:Depends} + ${python3:Depends}, + python3-pyvcf +Description: helper scripts for Variant Call Format (VCF) parser + The Variant Call Format (VCF) specifies the format of a text file used + in bioinformatics for storing gene sequence variations. The format has + been developed with the advent of large-scale genotyping and DNA + sequencing projects, such as the 1000 Genomes Project. + . + The intent of this module is to mimic the ``csv`` module in the Python + stdlib, as opposed to more flexible serialization formats like JSON or + YAML. ``vcf`` will attempt to parse the content of each record based on + the data types specified in the meta-information lines -- specifically + the ##INFO and + ##FORMAT lines. If these lines are missing or incomplete, it will check + against the reserved types mentioned in the spec. Failing that, it will + just return strings. + . + This package provides helper scripts using python3-pyvcf. + +Package: python-pyvcf-examples +Architecture: all +Depends: ${misc:Depends} +Suggests: python3-pyvcf | python-pyvcf Description: Example data for Variant Call Format (VCF) parser for Python The Variant Call Format (VCF) specifies the format of a text file used in bioinformatics for storing gene sequence variations. The format has diff --git a/debian/rules b/debian/rules index 34fefd6..e21fa24 100755 --- a/debian/rules +++ b/debian/rules @@ -6,6 +6,7 @@ export PYBUILD_NAME=pyvcf examplesdir=debian/python-$(PYBUILD_NAME)-examples/usr/share/doc/python-$(PYBUILD_NAME)-examples +helperdir=debian/$(PYBUILD_NAME)/usr %: dh $@ --with python2,python3 --buildsystem=pybuild @@ -17,6 +18,11 @@ override_dh_install: mv `find debian/python-$(PYBUILD_NAME) -type d -name test | head -n 1` $(examplesdir) find debian/python3-$(PYBUILD_NAME) -type d -name test | xargs rm -rf find $(examplesdir) -name "*.pyc" -delete + mkdir -p $(helperdir) + mv debian/python3-$(PYBUILD_NAME)/usr/bin $(helperdir) + # strip .py extension + mv $(helperdir)/bin/vcf_filter.py $(helperdir)/bin/vcf_filter + rm -rf debian/python-$(PYBUILD_NAME)/usr/bin get-orig-source: . debian/get-orig-source -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/python-pyvcf.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
