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commit aeb2464521a186bd3a10f10c449bb18be4915308 Author: Andreas Tille <[email protected]> Date: Thu Oct 29 17:07:49 2015 +0100 Imported Upstream version 2.30.0 --- DESCRIPTION | 4 ++-- R/methods-VersionsNull.R | 2 +- R/methods-eSet.R | 2 +- build/vignette.rds | Bin 343 -> 344 bytes inst/doc/BiobaseDevelopment.pdf | Bin 246480 -> 223305 bytes inst/doc/ExpressionSetIntroduction.pdf | Bin 174953 -> 157770 bytes inst/doc/esApply.pdf | Bin 93292 -> 86615 bytes 7 files changed, 4 insertions(+), 4 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index 468e6f1..35cff60 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,6 +1,6 @@ Package: Biobase Title: Biobase: Base functions for Bioconductor -Version: 2.28.0 +Version: 2.30.0 Author: R. Gentleman, V. Carey, M. Morgan, S. Falcon Description: Functions that are needed by many other packages or which replace R functions. @@ -22,4 +22,4 @@ Collate: tools.R strings.R environment.R vignettes.R packages.R LazyLoad: yes biocViews: Infrastructure NeedsCompilation: yes -Packaged: 2015-04-17 02:06:16 UTC; biocbuild +Packaged: 2015-10-14 00:32:21 UTC; biocbuild diff --git a/R/methods-VersionsNull.R b/R/methods-VersionsNull.R index 7e47a79..0d59047 100644 --- a/R/methods-VersionsNull.R +++ b/R/methods-VersionsNull.R @@ -3,7 +3,7 @@ setMethod("initialize", signature(.Object="VersionsNull"), function(.Object, ...) { - if (length(list(...))) + if (!missing(...)) warning("ignoring arguments to '.VersionsNull()')") .Object }) diff --git a/R/methods-eSet.R b/R/methods-eSet.R index 05fe104..20a2b9c 100644 --- a/R/methods-eSet.R +++ b/R/methods-eSet.R @@ -355,7 +355,7 @@ setMethod("[", "eSet", function(x, i, j, ..., drop = FALSE) { if (missing(drop)) drop <- FALSE if (missing(i) && missing(j)) { - if (length(list(...))!=0) + if (!missing(...)) stop("specify genes or samples to subset; use '", substitute(x), "$", names(list(...))[[1]], "' to access phenoData variables") diff --git a/build/vignette.rds b/build/vignette.rds index a8c31e8..0ab9656 100644 Binary files a/build/vignette.rds and b/build/vignette.rds differ diff --git a/inst/doc/BiobaseDevelopment.pdf b/inst/doc/BiobaseDevelopment.pdf index 1f9e815..d2054f3 100644 Binary files a/inst/doc/BiobaseDevelopment.pdf and b/inst/doc/BiobaseDevelopment.pdf differ diff --git a/inst/doc/ExpressionSetIntroduction.pdf b/inst/doc/ExpressionSetIntroduction.pdf index 9b27bc8..c267e2a 100644 Binary files a/inst/doc/ExpressionSetIntroduction.pdf and b/inst/doc/ExpressionSetIntroduction.pdf differ diff --git a/inst/doc/esApply.pdf b/inst/doc/esApply.pdf index 1b6e310..96909f0 100644 Binary files a/inst/doc/esApply.pdf and b/inst/doc/esApply.pdf differ -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/r-bioc-biobase.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
