Author: tille Date: 2015-11-06 10:53:07 +0000 (Fri, 06 Nov 2015) New Revision: 20404
Modified: trunk/packages/R/r-bioc-rtracklayer/trunk/debian/changelog trunk/packages/R/r-bioc-rtracklayer/trunk/debian/control trunk/packages/R/r-bioc-rtracklayer/trunk/debian/patches/use_debian_packaged_zlib.patch Log: New upstream version Modified: trunk/packages/R/r-bioc-rtracklayer/trunk/debian/changelog =================================================================== --- trunk/packages/R/r-bioc-rtracklayer/trunk/debian/changelog 2015-11-06 10:49:48 UTC (rev 20403) +++ trunk/packages/R/r-bioc-rtracklayer/trunk/debian/changelog 2015-11-06 10:53:07 UTC (rev 20404) @@ -1,3 +1,9 @@ +r-bioc-rtracklayer (1.30.1-1) unstable; urgency=medium + + * New upstream version + + -- Andreas Tille <[email protected]> Fri, 06 Nov 2015 09:01:53 +0100 + r-bioc-rtracklayer (1.28.10-1) unstable; urgency=medium * New upstream version Modified: trunk/packages/R/r-bioc-rtracklayer/trunk/debian/control =================================================================== --- trunk/packages/R/r-bioc-rtracklayer/trunk/debian/control 2015-11-06 10:49:48 UTC (rev 20403) +++ trunk/packages/R/r-bioc-rtracklayer/trunk/debian/control 2015-11-06 10:53:07 UTC (rev 20404) @@ -8,7 +8,7 @@ r-base-dev, r-cran-xml, r-cran-rcurl, - r-bioc-genomicalignments (>= 1.4.1) + r-bioc-genomicalignments (>= 1.6.0) Standards-Version: 3.9.6 Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-rtracklayer/trunk/ Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-rtracklayer/trunk/ @@ -21,7 +21,7 @@ ${shlibs:Depends}, r-cran-xml, r-cran-rcurl, - r-bioc-genomicalignments (>= 1.4.1) + r-bioc-genomicalignments (>= 1.6.0) Description: GNU R interface to genome browsers and their annotation tracks Extensible framework for interacting with multiple genome browsers (currently UCSC built-in) and manipulating annotation tracks in various Modified: trunk/packages/R/r-bioc-rtracklayer/trunk/debian/patches/use_debian_packaged_zlib.patch =================================================================== --- trunk/packages/R/r-bioc-rtracklayer/trunk/debian/patches/use_debian_packaged_zlib.patch 2015-11-06 10:49:48 UTC (rev 20403) +++ trunk/packages/R/r-bioc-rtracklayer/trunk/debian/patches/use_debian_packaged_zlib.patch 2015-11-06 10:53:07 UTC (rev 20404) @@ -3,17 +3,6 @@ Description: If the systems includes zlib natively there is no point in requiring the import of zlibbioc ---- a/DESCRIPTION -+++ b/DESCRIPTION -@@ -5,7 +5,7 @@ Author: Michael Lawrence, Vince Carey, R - Depends: R (>= 2.10), methods, GenomicRanges (>= 1.19.3) - Imports: XML (>= 1.98-0), BiocGenerics (>= 0.13.8), S4Vectors (>= - 0.5.11), IRanges (>= 2.1.41), XVector (>= 0.5.8), GenomeInfoDb -- (>= 1.3.14), Biostrings (>= 2.33.14), zlibbioc, RCurl (>= -+ (>= 1.3.14), Biostrings (>= 2.33.14), RCurl (>= - 1.4-2), Rsamtools (>= 1.17.8), GenomicAlignments (>= 1.3.23), - tools - Suggests: BSgenome (>= 1.33.4), humanStemCell, microRNA (>= 1.1.1), --- a/NAMESPACE +++ b/NAMESPACE @@ -6,7 +6,6 @@ useDynLib(rtracklayer, .registration = T @@ -24,3 +13,14 @@ ### - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ### base packages +--- a/DESCRIPTION ++++ b/DESCRIPTION +@@ -5,7 +5,7 @@ Author: Michael Lawrence, Vince Carey, R + Depends: R (>= 2.10), methods, GenomicRanges (>= 1.21.20) + Imports: XML (>= 1.98-0), BiocGenerics (>= 0.13.8), S4Vectors (>= + 0.7.11), IRanges (>= 2.3.7), XVector (>= 0.9.4), GenomeInfoDb +- (>= 1.3.14), Biostrings (>= 2.37.1), zlibbioc, RCurl (>= ++ (>= 1.3.14), Biostrings (>= 2.37.1), RCurl (>= + 1.4-2), Rsamtools (>= 1.17.8), GenomicAlignments (>= 1.5.4), + tools + Suggests: BSgenome (>= 1.33.4), humanStemCell, microRNA (>= 1.1.1), _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
