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commit 89ad2673ea01ce63bf3032993efbd6b5bdcaa806 Merge: ecc38fe 8fe98ea Author: Andreas Tille <[email protected]> Date: Tue Nov 10 21:08:57 2015 +0100 Merge tag 'upstream/2.3-1' Upstream version 2.3-1 DESCRIPTION | 10 +-- MD5 | 135 ++++++++++++++++++++-------------------- NAMESPACE | 4 +- R/adonis.R | 6 +- R/alias.cca.R | 4 +- R/anosim.R | 3 +- R/anova.cca.R | 16 +++-- R/anova.ccabyterm.R | 70 ++++++++++++++------- R/anova.ccalist.R | 30 +++++---- R/anova.ccanull.R | 21 ++++--- R/biplot.rda.R | 7 ++- R/centroids.cca.R | 2 +- R/factorfit.R | 3 +- R/mantel.R | 3 +- R/mantel.partial.R | 3 +- R/metaMDS.R | 21 ++++--- R/metaMDSdist.R | 1 + R/monoMDS.R | 2 +- R/mrpp.R | 3 +- R/mso.R | 4 +- R/oecosimu.R | 11 +++- R/ordiR2step.R | 5 ++ R/ordiareatest.R | 3 +- R/permustats.R | 37 +++++++---- R/permutest.betadisper.R | 10 +-- R/permutest.cca.R | 4 -- R/plot.cca.R | 10 +-- R/plot.prc.R | 9 +-- R/points.cca.R | 9 +-- R/predict.cca.R | 11 ++-- R/predict.rda.R | 11 ++-- R/print.cca.R | 2 +- R/print.permutest.cca.R | 3 +- R/protest.R | 3 +- R/rarecurve.R | 10 +++ R/scalingUtils.R | 27 ++++++++ R/scores.cca.R | 22 ++++--- R/scores.rda.R | 6 +- R/simper.R | 3 +- R/summary.cca.R | 14 +++-- R/summary.prc.R | 7 +-- R/text.cca.R | 9 +-- R/tolerance.cca.R | 9 ++- R/vectorfit.R | 3 +- data/BCI.env.rda | Bin 0 -> 337 bytes inst/NEWS.Rd | 79 +++++++++++++++++++++++ inst/doc/FAQ-vegan.pdf | Bin 148353 -> 148353 bytes inst/doc/NEWS.html | 92 +++++++++++++++++++++++++++ inst/doc/decision-vegan.pdf | Bin 342516 -> 342248 bytes inst/doc/diversity-vegan.pdf | Bin 365737 -> 365321 bytes inst/doc/intro-vegan.pdf | Bin 235169 -> 234771 bytes man/BCI.Rd | 42 +++++++++---- man/adipart.Rd | 6 +- man/anova.cca.Rd | 5 +- man/biplot.rda.Rd | 22 +++++-- man/cca.Rd | 4 +- man/diversity.Rd | 107 +++++-------------------------- man/monoMDS.Rd | 2 +- man/permustats.Rd | 12 ++-- man/plot.cca.Rd | 75 ++++++++++++++-------- man/prc.Rd | 23 +++++-- man/predict.cca.Rd | 16 +++-- man/{diversity.Rd => rarefy.Rd} | 95 ++++------------------------ man/specaccum.Rd | 77 +++++++++++------------ man/tolerance.Rd | 8 ++- vignettes/FAQ-vegan.pdf | Bin 148353 -> 148353 bytes vignettes/NEWS.html | 92 +++++++++++++++++++++++++++ vignettes/decision-vegan.tex | 20 +++--- vignettes/diversity-vegan.tex | 80 ++++++++++++------------ vignettes/intro-vegan.tex | 50 +++++++-------- 70 files changed, 915 insertions(+), 578 deletions(-) -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/r-cran-vegan.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
