This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository fastml.
commit f372b9c36b7e9905e17035faa1bb7e0569dc65c1 Author: Andreas Tille <[email protected]> Date: Thu Nov 19 09:01:43 2015 +0100 More spelling fixes and upload to new --- debian/changelog | 6 +++--- debian/patches/spelling.patch | 24 ++++++++++++++++++++++++ 2 files changed, 27 insertions(+), 3 deletions(-) diff --git a/debian/changelog b/debian/changelog index 57b24e0..9e2b14c 100644 --- a/debian/changelog +++ b/debian/changelog @@ -1,5 +1,5 @@ -fastml (3.1-1) UNRELEASED; urgency=low +fastml (3.1-1) unstable; urgency=low - * Initial release (Closes: #<bug>) + * Initial release (Closes: #805529) - -- Andreas Tille <[email protected]> Mon, 22 Jun 2015 09:47:25 +0200 + -- Andreas Tille <[email protected]> Thu, 19 Nov 2015 09:01:33 +0100 diff --git a/debian/patches/spelling.patch b/debian/patches/spelling.patch index 17e6ed9..32610f9 100644 --- a/debian/patches/spelling.patch +++ b/debian/patches/spelling.patch @@ -53,6 +53,15 @@ Description: Fix some spelling issues return -1; --- a/programs/fastml/bb_options_list.h +++ b/programs/fastml/bb_options_list.h +@@ -9,7 +9,7 @@ static string usage() { + tmp +=" |-t tree input file |\n"; + tmp +=" | (if tree is not given, a neighbor joining tree is computed). |\n"; + tmp +=" |-g Assume among site rate variation model (Gamma) [By default the program |\n"; +- tmp +=" | will assume an homogenous model. very fast, but less accurate!] |\n"; ++ tmp +=" | will assume an homogeneous model. very fast, but less accurate!] |\n"; + tmp += "|-m model name |\n"; + tmp += "|-mj [JTT] |\n"; + tmp += "|-ml LG |\n"; @@ -36,7 +36,7 @@ static string usage() { tmp +=" | -qm = MOLPHY, -qs = MASE, -qp = PHLIYP, -qn = Nexus |\n"; tmp +=" +----------------------------------------------------------------------------+\n"; @@ -84,3 +93,18 @@ Description: Fix some spelling issues else LOGnOUT(4,<<"Root(1) freq is sampled once for the entire replication (sim all positions)"<<endl) if(isComputeEmpiricalCorrection +--- a/libs/phylogeny/likeDistfixRoot.cpp ++++ b/libs/phylogeny/likeDistfixRoot.cpp +@@ -145,10 +145,10 @@ MDOUBLE likeDistfixRoot::evalLogLikeliho + // const sequence& s2, + // const vector<MDOUBLE> * weights, + // MDOUBLE* score) const { +-// // only in the case of homogenous model - work through pairwise EM like ++// // only in the case of homogeneous model - work through pairwise EM like + // countTableComponentGam ctc; + // if (_sp.categories() != 1) { +-// errorMsg::reportError("this function only work for homogenous model."); ++// errorMsg::reportError("this function only work for homogeneous model."); + // } + // ctc.countTableComponentAllocatePlace(s1.getAlphabet()->size(),1); + // for (int i=0; i<s1.seqLen(); ++i) { -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/fastml.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
