Author: tille Date: 2015-11-25 15:55:38 +0000 (Wed, 25 Nov 2015) New Revision: 20551
Added: trunk/packages/qiime/trunk/debian/source/lintian-overrides Modified: trunk/packages/qiime/trunk/debian/changelog trunk/packages/qiime/trunk/debian/copyright Log: DEP5 fixes, Add lintian override for false positive about JS without source Modified: trunk/packages/qiime/trunk/debian/changelog =================================================================== --- trunk/packages/qiime/trunk/debian/changelog 2015-11-25 13:09:06 UTC (rev 20550) +++ trunk/packages/qiime/trunk/debian/changelog 2015-11-25 15:55:38 UTC (rev 20551) @@ -1,3 +1,15 @@ +qiime (1.9.1+dfsg-1) UNRELEASED; urgency=medium + + * Take over changes from BioLinux for new upstream version + * adapt d/watch and get-orig-source target to new uscan + * cme fix dpkg-control + * Remove denoiser from d/control since there is no such package + any more + * DEP5 fixes + * Add lintian override for false positive about JS without source + + -- Andreas Tille <[email protected]> Wed, 29 Jul 2015 14:31:20 +0200 + qiime (1.9.1+dfsg-0ubuntu1) trusty; urgency=medium * New upstream - should be a bugfix upgrade @@ -10,18 +22,6 @@ -- Tim Booth <[email protected]> Thu, 30 Jul 2015 10:17:08 +0100 -qiime (1.9.0+dfsg-1) UNRELEASED; urgency=medium - - * Take over changes from BioLinux for new upstream version - * adapt d/watch and get-orig-source target to new uscan - * cme fix dpkg-control - * Remove denoiser from d/control since there is no such package - any more - TODO: - svn://anonscm.debian.org/debian-med/trunk/packages/python-burrito/trunk/ - - -- Andreas Tille <[email protected]> Wed, 29 Jul 2015 14:31:20 +0200 - qiime (1.9.0+dfsg-0biolinux5) trusty; urgency=medium * Fix /usr/bin/qiime (again) and update help for usearch Modified: trunk/packages/qiime/trunk/debian/copyright =================================================================== --- trunk/packages/qiime/trunk/debian/copyright 2015-11-25 13:09:06 UTC (rev 20550) +++ trunk/packages/qiime/trunk/debian/copyright 2015-11-25 15:55:38 UTC (rev 20551) @@ -11,28 +11,7 @@ Kyle Bittinger and others License: GPL-2+ -License: GPL-2+ - This program is free software; you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation; either version 2 of the License, or - (at your option) any later version. - . - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - . - You should have received a copy of the GNU General Public License along - with this program; if not, write to the Free Software Foundation, Inc., - 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. - . - For other licensing arrangements, please contact Daniel J. Schaid. - . - On a Debian system, the GNU GPL license version 2 is distributed in the file - ./usr/share/common-licenses/GPL-2.. - Files: qiime_test_data/align_seqs/core_set_aligned.fasta.imputed - qiime_test_data/filter_alignment/lanemask_in_1s_and_0s Copyright: (C) The Greengenes Database Consortium <http://greengenes.secondgenome.com/> License: CC-BY-SA The Greengenes Database by The Greengenes Database Consortium is licensed under @@ -54,31 +33,12 @@ Copyright: Denis Howlett <[email protected]> License: MIT -License: MIT - Permission is hereby granted, free of charge, to any person obtaining a - copy of this software and associated documentation files (the - "Software"), to deal in the Software without restriction, including - without limitation the rights to use, copy, modify, merge, publish, - distribute, sublicense, and/or sell copies of the Software, and to - permit persons to whom the Software is furnished to do so, subject to - the following conditions: - . - The above copyright notice and this permission notice shall be included - in all copies or substantial portions of the Software. - . - THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS - OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF - MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. - IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY - CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, - TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE - SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. - Files: qiime/support_files/js/overlib.js Copyright: 1998-2004 Erik Bosrup. All rights reserved. +License: overlib Contributors are listed on the homepage. This file might be old, always check for the latest version at: - http://www.bosrup.com/web/overlib/ + https://github.com/overlib/overlib . Please read the license agreement (available through the link above) before using overLIB. Direct any licensing questions to [email protected]. @@ -89,6 +49,7 @@ use overLIB and submit changes of the script so other people can use them as well. Comment: The link above throws 404 + Project moved to Github but the License file was not moved. Files: debian/* Copyright: 2010 Sri Girish Srinivasa Murthy <[email protected]> @@ -96,5 +57,44 @@ 2011-2012 Tim Booth <[email protected]>, Andreas Tille <[email protected]> License: GPL-2+ - Same as software itself. +License: GPL-2+ + This program is free software; you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation; either version 2 of the License, or + (at your option) any later version. + . + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + . + You should have received a copy of the GNU General Public License along + with this program; if not, write to the Free Software Foundation, Inc., + 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. + . + For other licensing arrangements, please contact Daniel J. Schaid. + . + On a Debian system, the GNU GPL license version 2 is distributed in the + file /usr/share/common-licenses/GPL-2. + +License: MIT + Permission is hereby granted, free of charge, to any person obtaining a + copy of this software and associated documentation files (the + "Software"), to deal in the Software without restriction, including + without limitation the rights to use, copy, modify, merge, publish, + distribute, sublicense, and/or sell copies of the Software, and to + permit persons to whom the Software is furnished to do so, subject to + the following conditions: + . + The above copyright notice and this permission notice shall be included + in all copies or substantial portions of the Software. + . + THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS + OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF + MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. + IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY + CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, + TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE + SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + Added: trunk/packages/qiime/trunk/debian/source/lintian-overrides =================================================================== --- trunk/packages/qiime/trunk/debian/source/lintian-overrides (rev 0) +++ trunk/packages/qiime/trunk/debian/source/lintian-overrides 2015-11-25 15:55:38 UTC (rev 20551) @@ -0,0 +1,4 @@ +# These files are actually editable JS source files and the lintian error is a false positive +qiime source: source-is-missing qiime/support_files/js/overlib.js +qiime source: source-is-missing qiime_test_data/make_2d_plots/js/overlib.js + _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
