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commit 0f6c6ca14733d0a71d5643c862ebc471c7b54ea9 Author: Emily Ruzich <[email protected]> Date: Mon Mar 21 12:43:37 2011 -0400 fixing manual --- doc/source/manual/browse.rst | 6 +++--- doc/source/manual/list.rst | 2 +- doc/source/manual/mne.rst | 4 ++-- doc/source/manual/sampledata.rst | 12 ++++++------ 4 files changed, 12 insertions(+), 12 deletions(-) diff --git a/doc/source/manual/browse.rst b/doc/source/manual/browse.rst index d23890b..28a33f6 100644 --- a/doc/source/manual/browse.rst +++ b/doc/source/manual/browse.rst @@ -1338,7 +1338,7 @@ the following items: Starts mne_analyze in the head position visualization mode and shows the relative position of the MEG sensor array and the head using the data in the presently open raw data file. For more details on - the head position visualization mode, see Section 7.21. + the head position visualization mode, see Section 7.21.**what?? does not exist!** **Quit mne_analyze...** @@ -2424,7 +2424,7 @@ Since the signal-space projection modifies the signal vectors originating in the brain, it is necessary to apply the projection to the forward solution in the course of inverse computations. This is accomplished by mne_inverse_operator as -described in Section 6.4. For more information on SSP, +described in :ref:`CBBDDBGF`. For more information on SSP, please consult the references listed in Section 13.4. .. _CACFGIEC: @@ -2583,7 +2583,7 @@ are read by mne_inverse_operator and applied to the forward solution as well as appropriate. Inclusion of the projections into the covariance matrix limits the possibilities to use the ``--bad`` and ``--proj`` options in mne_inverse_operator , -see Section 6.4. +see :ref:`CBBDDBGF`. .. _CACGHEGC: diff --git a/doc/source/manual/list.rst b/doc/source/manual/list.rst index 1be7747..a9496ad 100644 --- a/doc/source/manual/list.rst +++ b/doc/source/manual/list.rst @@ -54,7 +54,7 @@ in italics. :ref:`BABDJHGH` lists various supplementary utilities. | | :ref:`CHDDIBAH`. | +----------------------------+--------------------------------------------+ | mne_inverse_operator | Compute the inverse operator decomposition | - | | see Section 6.4. | + | | see :ref:`CBBDDBGF`. | +----------------------------+--------------------------------------------+ | *mne_make_movie* | Make movies in batch mode, see | | | :ref:`CBBECEDE`. | diff --git a/doc/source/manual/mne.rst b/doc/source/manual/mne.rst index 0f7a7f4..c21a634 100644 --- a/doc/source/manual/mne.rst +++ b/doc/source/manual/mne.rst @@ -1042,11 +1042,11 @@ Label processing specify regions of interests (ROIs). A label file name should end with ``-lh.label`` for left-hemisphere ROIs and with ``-rh.label`` for right-hemisphere ones. The corresponding output files are tagged - with ``-lh-`` <data type> ``.amp`` and ``-rh-`` <data type> ``.amp`` , respectively. <data type> equals ``'mne`` ' for + with ``-lh-`` <data type> ``.amp`` and ``-rh-`` <data type> ``.amp``, respectively. <data type> equals ``'mne`` ' for expected current data and ``'spm`` ' for dSPM data. Each line of the output file contains the waveform of the output quantity at one of the source locations falling inside - the ROI. For more information about the label output formats, see Section 7.13.3.1. + the ROI. For more information about the label output formats, see :ref:`CACJJGFA`. **\---labelcoords** diff --git a/doc/source/manual/sampledata.rst b/doc/source/manual/sampledata.rst index 6507503..ccf7a13 100644 --- a/doc/source/manual/sampledata.rst +++ b/doc/source/manual/sampledata.rst @@ -727,14 +727,14 @@ Select Windows/Show viewer... . After a while the viewer window appears. Click on the N100m peak again. Once the field map preparation computations are complete, the magnetic field and potential maps appear. Investigate the viewer -window options with help of Section 7.10. +window options with help of :ref:`CACEFFJF`. Show current estimates ====================== The options affecting the current estimates are accessible from Adjust/Estimate parameters... . -With help of Section 7.12, investigate the effects of the +With help of :ref:`CACBHDBF`, investigate the effects of the parameter settings. Labels and timecourses @@ -745,14 +745,14 @@ called ``label`` : ``mkdir label`` -Using the information in Section 7.13.4 create two -labels: ``A-lh.label`` and ``A-rh.label`` in the +Using the information in :ref:`CACJCFJJ`, create two +labels ``A-lh.label`` and ``A-rh.label`` in the approximate location of the left and right auditory cortices. Save these labels in the newly created ``label`` directory. Load all labels from the ``label`` directory and investigate the timecourses in these two labels as well as at invidual -vertices. Information on label processing can be found from Section 7.13. +vertices. Information on label processing can be found from :ref:`CACCCFHH`. Morphing ======== @@ -760,7 +760,7 @@ Morphing Goto to ``$SUBJECTS_DIR`` and create the directory ``morph-maps`` . Load the inflated surface for subject morph as the morphing surfaces. Try switching between the original and morphing -surfaces. More information about morphing is available in Section 7.9 and +surfaces. More information about morphing is available in :ref:`CACGBEIB` and in :ref:`ch_morph`. There is also a left-hemisphere occipital patch file available -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/python-mne.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
