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commit 9db7749f11280d115cd6776c78df732fccac20ef Author: Emily Ruzich <[email protected]> Date: Wed Mar 23 16:44:14 2011 -0400 fixing manual --- doc/source/manual/browse.rst | 6 +++--- doc/source/manual/cookbook.rst | 4 ++-- doc/source/manual/list.rst | 4 ++-- doc/source/manual/mne.rst | 2 +- doc/source/manual/sampledata.rst | 2 +- 5 files changed, 9 insertions(+), 9 deletions(-) diff --git a/doc/source/manual/browse.rst b/doc/source/manual/browse.rst index 306b4b8..4c94d4e 100644 --- a/doc/source/manual/browse.rst +++ b/doc/source/manual/browse.rst @@ -1498,7 +1498,7 @@ interesting time points in the data. When a raw data file is opened, a standard event file is consulted for the list of events. If this file is not present, the digital trigger channel, defined by the --digtrig option or the ``MNE_TRIGGER_CH_NAME`` environment variable is -scanned for events. For more information, see Sections :ref:`BABBGJEA` and :ref:`CACDCHAJ`. +scanned for events. For more information, see :ref:`BABBGJEA` and :ref:`CACDCHAJ`. In addition to the events detected on the trigger channel, it is possible to associate user-defined events to the data, either @@ -1560,7 +1560,7 @@ below. The loading dialogs have the following options: Only those events which will contain comments and in which the comment matches the entered text are loaded. This filtering option is useful, *e.g.*, in loading averaging or covariance matrix computation log files, - see Sections :ref:`BABIHFBI` and :ref:`BABCGEJE`. + see :ref:`BABIHFBI` and :ref:`BABCGEJE`. If the word *omit* is entered as the filter, only events corresponding to discarded epochs are loaded and the reason for rejection can be investigated in detail. @@ -2425,7 +2425,7 @@ originating in the brain, it is necessary to apply the projection to the forward solution in the course of inverse computations. This is accomplished by mne_inverse_operator as described in :ref:`CBBDDBGF`. For more information on SSP, -please consult the references listed in Section 13.4. +please consult the references listed in :ref:`CEGIEEBB`. .. _CACFGIEC: diff --git a/doc/source/manual/cookbook.rst b/doc/source/manual/cookbook.rst index b382383..bc5e30a 100644 --- a/doc/source/manual/cookbook.rst +++ b/doc/source/manual/cookbook.rst @@ -599,7 +599,7 @@ in elevated noise level in the data. It is advisable to lowpass filter and downsample the large raw data files often emerging in cognitive and patient studies to speed up subsequent processing. This can be accomplished with the mne_process_raw and mne_browse_raw software -modules. For details, see Sections 4.2.3 and 4.4.3. +modules. For details, see :ref:`CACFAAAJ` and :ref:`CACBDDIE`. .. note:: It is recommended that the original raw file is called <name>_raw.fif and the downsampled version <name>_ds_raw.fif , respectively. @@ -914,7 +914,7 @@ the following options: **\---depth** Employ depth weighting with the standard settings. For details, - see Sections 6.2.10 and 6.4. + see :ref:`CBBDFJIE` and :ref:`CBBDDBGF`. **\---bad <name>** diff --git a/doc/source/manual/list.rst b/doc/source/manual/list.rst index c2a040c..9af0f22 100644 --- a/doc/source/manual/list.rst +++ b/doc/source/manual/list.rst @@ -85,8 +85,8 @@ in italics. :ref:`BABDJHGH` lists various supplementary utilities. | | files describing the anatomical MRI data, | | | see :ref:`BABCCEHF` | +----------------------------+--------------------------------------------+ - | *mne_setup_source_space* | A convenience script to create a source | - | | space description file, see Section 3.5. | + | *mne_setup_source_space* | A convenience script to create source space| + | | description file, see :ref:`CIHCHDAE`. | +----------------------------+--------------------------------------------+ | mne_show_environment | Show information about the production | | | environment of a file. | diff --git a/doc/source/manual/mne.rst b/doc/source/manual/mne.rst index 04db63d..b414492 100644 --- a/doc/source/manual/mne.rst +++ b/doc/source/manual/mne.rst @@ -621,7 +621,7 @@ The command-line options of ``mne_inverse_operator`` are: statistics for the source space. Since this computation is time consuming, it is recommended that the patch statistics are precomputed and the source space file containing the patch information is employed - already when the forward solution is computed, see :ref:`CIHCHDAE` and Section 3.11. + already when the forward solution is computed, see :ref:`CIHCHDAE` and :ref:`BABCHEJD`. For technical details of the patch information, please consult :ref:`CBBDBHDI`. This option is considered experimental at the moment. diff --git a/doc/source/manual/sampledata.rst b/doc/source/manual/sampledata.rst index ccf7a13..2a7baa6 100644 --- a/doc/source/manual/sampledata.rst +++ b/doc/source/manual/sampledata.rst @@ -147,7 +147,7 @@ in the sample data set: see Section A.1. - The MEG/EEG raw data file has been checked with the utilities described - in Sections 3.9.1 and 3.9.2. + in :ref:`BABCDBDI` and :ref:`BABCDFJH`. - Template scripts for averaging and computation of the noise-covariance matrices have been written. -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/python-mne.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
