This is an automated email from the git hooks/post-receive script. yoh pushed a commit to annotated tag v0.1 in repository python-mne.
commit 758c90bddbd31403e1d9e7a0b843d6e5c2902cf4 Author: Alexandre Gramfort <[email protected]> Date: Mon Mar 28 16:08:37 2011 -0400 adding epoch rejection everywhere --- examples/plot_from_raw_to_epochs_to_evoked.py | 1 + examples/plot_whitened_evoked_data.py | 1 + examples/stats/plot_cluster_1samp_test_time_frequency.py | 1 + examples/stats/plot_cluster_stats_evoked.py | 2 ++ examples/stats/plot_cluster_stats_time_frequency.py | 2 ++ examples/stats/plot_sensor_permutation_test.py | 1 + examples/time_frequency/plot_time_frequency.py | 1 + mne/tests/test_epochs.py | 1 + 8 files changed, 10 insertions(+) diff --git a/examples/plot_from_raw_to_epochs_to_evoked.py b/examples/plot_from_raw_to_epochs_to_evoked.py index 6582ed7..629f70b 100644 --- a/examples/plot_from_raw_to_epochs_to_evoked.py +++ b/examples/plot_from_raw_to_epochs_to_evoked.py @@ -41,6 +41,7 @@ picks = fiff.pick_types(raw.info, meg=False, eeg=True, stim=False, # Read epochs epochs = mne.Epochs(raw, events, event_id, tmin, tmax, picks=picks, baseline=(None, 0)) +epochs.reject(grad=4000e-13, mag=4e-12, eeg=40e-6, eog=150e-6) evoked = epochs.average() # average epochs and get an Evoked dataset. evoked.save('sample_audvis_eeg-ave.fif') # save evoked data to disk diff --git a/examples/plot_whitened_evoked_data.py b/examples/plot_whitened_evoked_data.py index ab7a47e..01985ac 100644 --- a/examples/plot_whitened_evoked_data.py +++ b/examples/plot_whitened_evoked_data.py @@ -39,6 +39,7 @@ picks = fiff.pick_types(raw.info, meg=False, eeg=True, stim=False, exclude=exclude) epochs = mne.Epochs(raw, events, event_id, tmin, tmax, picks=picks, baseline=(None, 0)) +epochs.reject(grad=4000e-13, mag=4e-12, eeg=40e-6, eog=150e-6) evoked = epochs.average() # average epochs and get an Evoked dataset. cov = mne.Covariance() diff --git a/examples/stats/plot_cluster_1samp_test_time_frequency.py b/examples/stats/plot_cluster_1samp_test_time_frequency.py index 6e8b57a..a7fad3a 100644 --- a/examples/stats/plot_cluster_1samp_test_time_frequency.py +++ b/examples/stats/plot_cluster_1samp_test_time_frequency.py @@ -56,6 +56,7 @@ ch_name = raw.info['ch_names'][picks[0]] event_id = 1 epochs = mne.Epochs(raw, events, event_id, tmin, tmax, picks=picks, baseline=(None, 0)) +epochs.reject(grad=4000e-13, mag=4e-12, eeg=40e-6, eog=150e-6) data = epochs.get_data() # as 3D matrix data *= 1e13 # change unit to fT / cm # Time vector diff --git a/examples/stats/plot_cluster_stats_evoked.py b/examples/stats/plot_cluster_stats_evoked.py index e4c5cd4..08fbe55 100644 --- a/examples/stats/plot_cluster_stats_evoked.py +++ b/examples/stats/plot_cluster_stats_evoked.py @@ -42,11 +42,13 @@ picks = fiff.pick_types(raw.info, meg=False, include=include) event_id = 1 epochs1 = mne.Epochs(raw, events, event_id, tmin, tmax, picks=picks, baseline=(None, 0)) +epochs1.reject(grad=4000e-13, mag=4e-12, eeg=40e-6, eog=150e-6) condition1 = epochs1.get_data() # as 3D matrix event_id = 2 epochs2 = mne.Epochs(raw, events, event_id, tmin, tmax, picks=picks, baseline=(None, 0)) +epochs2.reject(grad=4000e-13, mag=4e-12, eeg=40e-6, eog=150e-6) condition2 = epochs2.get_data() # as 3D matrix condition1 = condition1[:,0,:] # take only one channel to get a 2D array diff --git a/examples/stats/plot_cluster_stats_time_frequency.py b/examples/stats/plot_cluster_stats_time_frequency.py index 095bef4..55c0b06 100644 --- a/examples/stats/plot_cluster_stats_time_frequency.py +++ b/examples/stats/plot_cluster_stats_time_frequency.py @@ -57,6 +57,7 @@ ch_name = raw.info['ch_names'][picks[0]] event_id = 1 epochs_condition_1 = mne.Epochs(raw, events, event_id, tmin, tmax, picks=picks, baseline=(None, 0)) +epochs_condition_1.reject(grad=4000e-13, mag=4e-12, eeg=40e-6, eog=150e-6) data_condition_1 = epochs_condition_1.get_data() # as 3D matrix data_condition_1 *= 1e13 # change unit to fT / cm @@ -64,6 +65,7 @@ data_condition_1 *= 1e13 # change unit to fT / cm event_id = 2 epochs_condition_2 = mne.Epochs(raw, events, event_id, tmin, tmax, picks=picks, baseline=(None, 0)) +epochs_condition_2.reject(grad=4000e-13, mag=4e-12, eeg=40e-6, eog=150e-6) data_condition_2 = epochs_condition_2.get_data() # as 3D matrix data_condition_2 *= 1e13 # change unit to fT / cm diff --git a/examples/stats/plot_sensor_permutation_test.py b/examples/stats/plot_sensor_permutation_test.py index 41969ec..17d3d1a 100644 --- a/examples/stats/plot_sensor_permutation_test.py +++ b/examples/stats/plot_sensor_permutation_test.py @@ -44,6 +44,7 @@ picks = fiff.pick_types(raw.info, meg='grad', eeg=False, stim=False, include=include, exclude=exclude) epochs = mne.Epochs(raw, events, event_id, tmin, tmax, picks=picks, baseline=(None, 0)) +epochs.reject(grad=4000e-13, mag=4e-12, eog=150e-6) data = epochs.get_data() times = epochs.times diff --git a/examples/time_frequency/plot_time_frequency.py b/examples/time_frequency/plot_time_frequency.py index 2ee160f..7933d40 100644 --- a/examples/time_frequency/plot_time_frequency.py +++ b/examples/time_frequency/plot_time_frequency.py @@ -44,6 +44,7 @@ picks = fiff.pick_types(raw.info, meg='grad', eeg=False, picks = [picks[97]] epochs = mne.Epochs(raw, events, event_id, tmin, tmax, picks=picks, baseline=(None, 0)) +epochs.reject(grad=4000e-13, mag=4e-12, eeg=40e-6, eog=150e-6) data = epochs.get_data() # as 3D matrix evoked = epochs.average() # compute evoked fields diff --git a/mne/tests/test_epochs.py b/mne/tests/test_epochs.py index 3760b3f..85ebc01 100644 --- a/mne/tests/test_epochs.py +++ b/mne/tests/test_epochs.py @@ -32,4 +32,5 @@ def test_read_epochs(): epochs = mne.Epochs(raw, events, event_id, tmin, tmax, picks=picks, baseline=(None, 0)) + epochs.reject(grad=4000e-13, mag=4e-12, eeg=40e-6, eog=150e-6) epochs.average() -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/python-mne.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
