This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository python-biopython.
commit 54bf6574ff5078762d7b8a1f3295db678b2f19f8 Author: Andreas Tille <[email protected]> Date: Wed Mar 9 15:25:31 2016 +0100 Exclude phyml test for the moment --- debian/README.source | 9 ++++++++- debian/changelog | 2 ++ debian/rules | 6 ++++-- 3 files changed, 14 insertions(+), 3 deletions(-) diff --git a/debian/README.source b/debian/README.source index 33ecf1c..c663daa 100644 --- a/debian/README.source +++ b/debian/README.source @@ -8,6 +8,7 @@ tests that can not be run: 3. non-free tools 4. tools that are not packaged for Debian yet 5. packages only available on some architectures are only tested there + 6. packages failing tests for some other reasons (phyml) The according tests are moved away from the test directory in the debian/rules file. Please look there if you want to know what tests @@ -62,11 +63,17 @@ The tools which are not packaged yet (item 4.) are: But it does not need to be explicitly excluded since the test suite itself checks the existence -Finally there is a package only available on amd64 architectures: +There is a package only available on amd64 architectures: bwa: The package is limited to amd64 only. So the Build-Depends from bwa is only on these architectures and the test is consequently only run there. +As described in Bug https://bugs.debian.org/813262 there is a problem +with phyml when using recent libhmsbeagle and the test is running in a +chroot that has no proper GPU (emulator). So for the moment we also +need to exclude phyml from testing. + + -- Andreas Tille <[email protected]> Tue, 04 Mar 2014 11:16:02 +0100 diff --git a/debian/changelog b/debian/changelog index f987b35..26d66b6 100644 --- a/debian/changelog +++ b/debian/changelog @@ -2,6 +2,8 @@ python-biopython (1.66+dfsg-2) UNRELEASED; urgency=medium * Packaging moved from SVN to Git * Bumped Standards-Version + * Exclude phyml test for the moment + Closes: #813262 -- Andreas Tille <[email protected]> Wed, 09 Mar 2016 12:52:12 +0100 diff --git a/debian/rules b/debian/rules index e1ecc8b..8e30a3e 100755 --- a/debian/rules +++ b/debian/rules @@ -34,8 +34,10 @@ endif # This would not trigger a failure but bloats the build log with irrelevant noise EXCLUDEDATABASE=BioSQL_MySQLdb BioSQL_psycopg2 -# No need to exclude any tests any more -EXCLUDEFAILINGTESTS= +# With recent phyml we get: +# ApplicationError: Non-zero return code 255 from 'phyml -i Phylip/interlaced2.phy -d aa', message 'beignet-opencl-icd: no supported GPU found, this is probably the wrong opencl-icd package for this hardware' +# See https://bugs.debian.org/813262 +EXCLUDEFAILINGTESTS=phyml_tool # FIXME: Currently it is not sure for what architecture samtools will be available # to anable a smooth migration to testing the build-dependency will be dropped -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/python-biopython.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
