Author: tille Date: 2016-04-28 08:51:38 +0000 (Thu, 28 Apr 2016) New Revision: 21779
Modified: trunk/packages/R/r-bioc-aroma.light/trunk/debian/changelog trunk/packages/R/r-bioc-aroma.light/trunk/debian/control trunk/packages/R/r-bioc-aroma.light/trunk/debian/tests/run-unit-test Log: Autopkgtest would need r-cran-princurve. Add this not yet packaged R package to Suggests and remove those parts from the test suite that are depending from it Modified: trunk/packages/R/r-bioc-aroma.light/trunk/debian/changelog =================================================================== --- trunk/packages/R/r-bioc-aroma.light/trunk/debian/changelog 2016-04-28 07:34:21 UTC (rev 21778) +++ trunk/packages/R/r-bioc-aroma.light/trunk/debian/changelog 2016-04-28 08:51:38 UTC (rev 21779) @@ -1,3 +1,11 @@ +r-bioc-aroma.light (3.0.0-2) UNRELEASED; urgency=medium + + * Autopkgtest would need r-cran-princurve. Add this not yet packaged + R package to Suggests and remove those parts from the test suite that + are depending from it + + -- Andreas Tille <[email protected]> Thu, 28 Apr 2016 10:49:04 +0200 + r-bioc-aroma.light (3.0.0-1) unstable; urgency=medium * New upstream version Modified: trunk/packages/R/r-bioc-aroma.light/trunk/debian/control =================================================================== --- trunk/packages/R/r-bioc-aroma.light/trunk/debian/control 2016-04-28 07:34:21 UTC (rev 21778) +++ trunk/packages/R/r-bioc-aroma.light/trunk/debian/control 2016-04-28 08:51:38 UTC (rev 21779) @@ -21,6 +21,7 @@ r-cran-r.methodss3, r-cran-matrixstats (>= 0.14.0), r-cran-r.utils +Suggests: r-cran-princurve Description: BioConductor methods normalization and visualization of microarray data This BioConductor module provides light-weight methods for normalization and visualization of microarray data using only basic R Modified: trunk/packages/R/r-bioc-aroma.light/trunk/debian/tests/run-unit-test =================================================================== --- trunk/packages/R/r-bioc-aroma.light/trunk/debian/tests/run-unit-test 2016-04-28 07:34:21 UTC (rev 21778) +++ trunk/packages/R/r-bioc-aroma.light/trunk/debian/tests/run-unit-test 2016-04-28 08:51:38 UTC (rev 21779) @@ -1,6 +1,7 @@ #!/bin/sh -e + oname=aroma.light -pkg=r-bioc-`echo $oname | tr [A-Z] [a-z]` +pkg=r-bioc-`echo $oname | tr '[A-Z]' '[a-z]'` if [ "$ADTTMP" = "" ] ; then ADTTMP=`mktemp -d /tmp/${pkg}-test.XXXXXX` @@ -9,6 +10,12 @@ cp /usr/share/doc/$pkg/tests/* $ADTTMP find . -name "*.gz" -exec gunzip \{\} \; for runtest in `ls *.R` ; do + if grep -q fitPrincipalCurve $runtest ; then + # Full test would beed princurve which is not packaged yet + # Just remove the code after this function was used from the test + echo '*** strip test since r-cran-princurve is not available as Debian package ***' + sed -i '/fitPrincipalCurve/,$d' $runtest + fi LC_ALL=C R --no-save < $runtest >/dev/null if [ ! $? ] ; then echo "Test ${runtest} failed" _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
