Author: tille Date: 2016-04-29 09:28:51 +0000 (Fri, 29 Apr 2016) New Revision: 21821
Modified: trunk/packages/R/r-cran-qtl/trunk/debian/changelog trunk/packages/R/r-cran-qtl/trunk/debian/docs trunk/packages/R/r-cran-qtl/trunk/debian/links trunk/packages/R/r-cran-qtl/trunk/debian/rules trunk/packages/R/r-cran-qtl/trunk/debian/tests/run-unit-test Log: Fix installation of test data inside the package, Fix autopkgtest Modified: trunk/packages/R/r-cran-qtl/trunk/debian/changelog =================================================================== --- trunk/packages/R/r-cran-qtl/trunk/debian/changelog 2016-04-29 07:59:53 UTC (rev 21820) +++ trunk/packages/R/r-cran-qtl/trunk/debian/changelog 2016-04-29 09:28:51 UTC (rev 21821) @@ -1,3 +1,10 @@ +r-cran-qtl (1.39-5-2) unstable; urgency=medium + + * Fix installation of test data inside the package + * Fix autopkgtest + + -- Andreas Tille <[email protected]> Fri, 29 Apr 2016 11:15:13 +0200 + r-cran-qtl (1.39-5-1) unstable; urgency=medium * New upstream version Modified: trunk/packages/R/r-cran-qtl/trunk/debian/docs =================================================================== --- trunk/packages/R/r-cran-qtl/trunk/debian/docs 2016-04-29 07:59:53 UTC (rev 21820) +++ trunk/packages/R/r-cran-qtl/trunk/debian/docs 2016-04-29 09:28:51 UTC (rev 21821) @@ -1,2 +1,3 @@ debian/README.test debian/tests/run-unit-test +tests \ No newline at end of file Modified: trunk/packages/R/r-cran-qtl/trunk/debian/links =================================================================== --- trunk/packages/R/r-cran-qtl/trunk/debian/links 2016-04-29 07:59:53 UTC (rev 21820) +++ trunk/packages/R/r-cran-qtl/trunk/debian/links 2016-04-29 09:28:51 UTC (rev 21821) @@ -1,4 +1 @@ -usr/lib/R/site-library/qtl/sampledata/gen.txt usr/share/doc/r-cran-qtl/tests/gen.txt -usr/lib/R/site-library/qtl/sampledata/listeria.csv usr/share/doc/r-cran-qtl/tests/listeria.csv -usr/lib/R/site-library/qtl/sampledata/map.txt usr/share/doc/r-cran-qtl/tests/map.txt -usr/lib/R/site-library/qtl/sampledata/phe.txt usr/share/doc/r-cran-qtl/tests/phe.txt +usr/lib/R/site-library/qtl/sampledata usr/share/doc/r-cran-qtl/examples Modified: trunk/packages/R/r-cran-qtl/trunk/debian/rules =================================================================== --- trunk/packages/R/r-cran-qtl/trunk/debian/rules 2016-04-29 07:59:53 UTC (rev 21820) +++ trunk/packages/R/r-cran-qtl/trunk/debian/rules 2016-04-29 09:28:51 UTC (rev 21821) @@ -1,9 +1,3 @@ #!/usr/bin/make -f include /usr/share/R/debian/r-cran.mk - -install/$(package):: - mkdir -p debian/$(package)/usr/share/doc/$(package) - mv debian/$(package)/usr/lib/R/site-library/$(cranNameOrig)/contrib debian/$(package)/usr/share/doc/$(package)/examples - mkdir -p debian/$(package)/usr/share/doc/$(package)/tests - cp -a tests/*.R tests/*.csv tests/*.map tests/*.raw tests/*.Rout.save debian/$(package)/usr/share/doc/$(package)/tests Modified: trunk/packages/R/r-cran-qtl/trunk/debian/tests/run-unit-test =================================================================== --- trunk/packages/R/r-cran-qtl/trunk/debian/tests/run-unit-test 2016-04-29 07:59:53 UTC (rev 21820) +++ trunk/packages/R/r-cran-qtl/trunk/debian/tests/run-unit-test 2016-04-29 09:28:51 UTC (rev 21821) @@ -5,8 +5,8 @@ ADTTMP=`mktemp -d /tmp/${pkg}-test.XXXXXX` fi cd $ADTTMP -cp /usr/share/doc/${pkg}/tests/* $ADTTMP -gunzip -r *.gz +cp -a /usr/share/doc/${pkg}/tests/* $ADTTMP +find . -name "*.gz" -exec gunzip \{\} \; for runtest in `ls *.R` ; do LC_ALL=C R --no-save < $runtest >/dev/null if [ ! $? ] ; then @@ -16,4 +16,4 @@ echo "Test ${runtest} passed" fi done -rm -rf $ADTTMP/* +# rm -rf $ADTTMP/* _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
