Author: tille Date: 2016-05-03 18:56:06 +0000 (Tue, 03 May 2016) New Revision: 21848
Added: trunk/packages/R/r-bioc-summarizedexperiment/trunk/debian/patches/ trunk/packages/R/r-bioc-summarizedexperiment/trunk/debian/patches/series trunk/packages/R/r-bioc-summarizedexperiment/trunk/debian/patches/skip_test_needing_not_packaged_database.patch Modified: trunk/packages/R/r-bioc-summarizedexperiment/trunk/debian/changelog Log: Skip test needing unpackaged database Modified: trunk/packages/R/r-bioc-summarizedexperiment/trunk/debian/changelog =================================================================== --- trunk/packages/R/r-bioc-summarizedexperiment/trunk/debian/changelog 2016-05-03 12:14:07 UTC (rev 21847) +++ trunk/packages/R/r-bioc-summarizedexperiment/trunk/debian/changelog 2016-05-03 18:56:06 UTC (rev 21848) @@ -1,3 +1,10 @@ +r-bioc-summarizedexperiment (1.0.2-3) unstable; urgency=medium + + * Skip test needing unpackaged database (thanks to Gordon Ball + <[email protected]> for the hint) + + -- Andreas Tille <[email protected]> Tue, 03 May 2016 20:27:21 +0200 + r-bioc-summarizedexperiment (1.0.2-2) unstable; urgency=medium * Add missing Depends to autopkgtest Added: trunk/packages/R/r-bioc-summarizedexperiment/trunk/debian/patches/series =================================================================== --- trunk/packages/R/r-bioc-summarizedexperiment/trunk/debian/patches/series (rev 0) +++ trunk/packages/R/r-bioc-summarizedexperiment/trunk/debian/patches/series 2016-05-03 18:56:06 UTC (rev 21848) @@ -0,0 +1 @@ +skip_test_needing_not_packaged_database.patch Added: trunk/packages/R/r-bioc-summarizedexperiment/trunk/debian/patches/skip_test_needing_not_packaged_database.patch =================================================================== --- trunk/packages/R/r-bioc-summarizedexperiment/trunk/debian/patches/skip_test_needing_not_packaged_database.patch (rev 0) +++ trunk/packages/R/r-bioc-summarizedexperiment/trunk/debian/patches/skip_test_needing_not_packaged_database.patch 2016-05-03 18:56:06 UTC (rev 21848) @@ -0,0 +1,19 @@ +Description: Skip test needing unpackaged database +Author: Andreas Tille <[email protected]> +Last-Update: Tue, 03 May 2016 20:27:21 +0200 + +--- a/inst/unitTests/test_makeSummarizedExperimentFromExpressionSet.R ++++ b/inst/unitTests/test_makeSummarizedExperimentFromExpressionSet.R +@@ -172,12 +172,5 @@ test_GenomicRanges_SummarizedExperiment_ + makeSummarizedExperimentFromExpressionSet(ExpressionSet(), + geneRangeMapper(NULL)))) + +- ## valid object from sample ExpressionSet +- se2 <- makeSummarizedExperimentFromExpressionSet(eset1, +- geneRangeMapper("TxDb.Hsapiens.UCSC.hg19.knownGene")) +- checkTrue(validObject(se2)) +- +- ## Granges returned have rownames that were from the featureNames +- checkTrue(all(rownames(rowRanges(se2)) %in% featureNames(eset1))) + } + _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
