Author: tille Date: 2016-05-08 06:56:05 +0000 (Sun, 08 May 2016) New Revision: 21870
Modified: trunk/packages/R/r-bioc-biocparallel/trunk/debian/changelog trunk/packages/R/r-bioc-biocparallel/trunk/debian/control trunk/packages/R/r-bioc-biocparallel/trunk/debian/patches/ignore_test_requiring_rmpi.patch Log: New upstream version Modified: trunk/packages/R/r-bioc-biocparallel/trunk/debian/changelog =================================================================== --- trunk/packages/R/r-bioc-biocparallel/trunk/debian/changelog 2016-05-08 06:52:49 UTC (rev 21869) +++ trunk/packages/R/r-bioc-biocparallel/trunk/debian/changelog 2016-05-08 06:56:05 UTC (rev 21870) @@ -1,3 +1,10 @@ +r-bioc-biocparallel (1.6.0-1) unstable; urgency=medium + + * New upstream version + * cme fix dpkg-control + + -- Andreas Tille <[email protected]> Sun, 08 May 2016 08:41:08 +0200 + r-bioc-biocparallel (1.4.3-1) unstable; urgency=medium * New upstream version Modified: trunk/packages/R/r-bioc-biocparallel/trunk/debian/control =================================================================== --- trunk/packages/R/r-bioc-biocparallel/trunk/debian/control 2016-05-08 06:52:49 UTC (rev 21869) +++ trunk/packages/R/r-bioc-biocparallel/trunk/debian/control 2016-05-08 06:56:05 UTC (rev 21870) @@ -12,7 +12,7 @@ r-cran-futile.logger, r-cran-snow, r-bioc-biocgenerics -Standards-Version: 3.9.7 +Standards-Version: 3.9.8 Vcs-Browser: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-biocparallel/trunk/ Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-biocparallel/trunk/ Homepage: http://bioconductor.org/packages/release/bioc/html/BiocParallel.html @@ -26,7 +26,8 @@ r-cran-futile.logger, r-cran-snow, r-bioc-biocgenerics -Recommends: r-cran-doparallel, r-bioc-rsamtools +Recommends: r-cran-doparallel, + r-bioc-rsamtools Suggests: r-cran-mpi Description: BioConductor facilities for parallel evaluation This BioConductor package provides modified versions and novel Modified: trunk/packages/R/r-bioc-biocparallel/trunk/debian/patches/ignore_test_requiring_rmpi.patch =================================================================== --- trunk/packages/R/r-bioc-biocparallel/trunk/debian/patches/ignore_test_requiring_rmpi.patch 2016-05-08 06:52:49 UTC (rev 21869) +++ trunk/packages/R/r-bioc-biocparallel/trunk/debian/patches/ignore_test_requiring_rmpi.patch 2016-05-08 06:56:05 UTC (rev 21870) @@ -7,14 +7,17 @@ --- a/inst/unitTests/test_SnowParam.R +++ b/inst/unitTests/test_SnowParam.R -@@ -19,18 +19,6 @@ test_SnowParam_SOCK <- function() - checkIdentical(FALSE, bpisup(param)) +@@ -24,21 +24,6 @@ test_SnowParam_SOCK_character <- functio + bpstop(bpstart(SnowParam("localhost"))) } -test_SnowParam_MPI <- function() -{ - if (.Platform$OS.type == "windows") -- return() +- DEACTIVATED("MPI tests not run on Windows") +- +- DEACTIVATED("MPI tests not run") +- - param <- SnowParam(2, "MPI", tasks=2) - checkIdentical(FALSE, bpisup(param)) - @@ -25,8 +28,8 @@ - test_SnowParam_coerce_from_SOCK <- function() { - if (!suppressWarnings(require(snow))) -@@ -54,34 +42,6 @@ test_SnowParam_coerce_from_SOCK <- funct + if (!requireNamespace("snow", quietly=TRUE)) +@@ -61,36 +46,6 @@ test_SnowParam_coerce_from_SOCK <- funct checkIdentical(TRUE, bpisup(p)) parallel::stopCluster(cl) @@ -35,12 +38,14 @@ -test_SnowParam_coerce_from_MPI <- function() -{ - if (.Platform$OS.type == "windows") -- return() -- if (!(suppressWarnings(require(snow)) || -- suppressWarnings(require(Rmpi)))) -- ## quietly succeed if 'snow', 'Rmpi' not available -- return() +- DEACTIVATED("MPI tests not run on Windows") +- +- if (!requireNamespace("snow", quietly=TRUE) || +- !requireNamespace("Rmpi", quietly=TRUE)) +- DEACTIVATED("'snow' and/or 'Rmpi' package did not load") - +- DEACTIVATED("MPI tests not run") +- - cl <- parallel::makeCluster(2L, "MPI") - p <- as(cl, "SnowParam") - checkTrue(validObject(p)) _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
