This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository libpal-java.
commit 4bfa00434a7c3b8a52ebb94d9a16c201c4b4d3f6 Author: Andreas Tille <[email protected]> Date: Mon May 23 22:34:23 2016 +0200 Add Class file that is contained in pal source code copy used by https://github.com/MesquiteProject/MesquiteCore --- debian/changelog | 7 ++++ debian/patches/TransitionProbability.patch | 58 ++++++++++++++++++++++++++++++ debian/patches/series | 1 + 3 files changed, 66 insertions(+) diff --git a/debian/changelog b/debian/changelog index 6bbc848..79cc94e 100644 --- a/debian/changelog +++ b/debian/changelog @@ -1,3 +1,10 @@ +libpal-java (1.5.1+dfsg-2) UNRELEASED; urgency=medium + + * Add Class file that is contained in pal source code copy + used by https://github.com/MesquiteProject/MesquiteCore + + -- Andreas Tille <[email protected]> Mon, 23 May 2016 22:30:16 +0200 + libpal-java (1.5.1+dfsg-1) unstable; urgency=low * debian/copyright: diff --git a/debian/patches/TransitionProbability.patch b/debian/patches/TransitionProbability.patch new file mode 100644 index 0000000..3140a8c --- /dev/null +++ b/debian/patches/TransitionProbability.patch @@ -0,0 +1,58 @@ +Description: Add Class file that is contained in pal source code copy + used by https://github.com/MesquiteProject/MesquiteCore + Original location of this file is + https://github.com/MesquiteProject/MesquiteCore/blob/master/LibrarySource/pal/substmodel/TransitionProbability.java +Author: Andreas Tille <[email protected]> +Last-Update: Mon, 23 May 2016 22:30:16 +0200 + +--- /dev/null ++++ b/src/pal/substmodel/TransitionProbability.java +@@ -0,0 +1,48 @@ ++// TransistionProbability.java ++// ++// (c) 1999-2001 PAL Development Core Team ++// ++// This package may be distributed under the ++// terms of the Lesser GNU General Public License (LGPL) ++ ++package pal.substmodel; ++ ++import pal.math.*; ++ ++ ++/** ++ * For objects that represent a source of transition probabilities ++ * ++ * TransitionProbability.java,v 1.3 2000/08/08 22:58:29 alexi Exp $ ++ * ++ * @author Matthew Goode ++ */ ++public interface TransitionProbability extends Cloneable, java.io.Serializable { ++ ++ /** ++ * compute transition probabilities for a expected distance ++ * using the prespecified rate matrix ++ * ++ * @param arc expected distance ++ */ ++ void setDistance(double arc); ++ /** ++ * compute transition probabilities for a expected time span ++ * using the prespecified rate matrix ++ * ++ * @param start start time ++ * @param end end time ++ */ ++ void setTime(double start, double end); ++ ++ /** ++ * Returns the transition probability for changing from ++ * startState into endState ++ * @param startState - the starting state ++ * @param endState - the resulting state ++ */ ++ double getTransitionProbability(int startState, int endState); ++ ++ int getDimension(); ++} ++ diff --git a/debian/patches/series b/debian/patches/series new file mode 100644 index 0000000..2b26127 --- /dev/null +++ b/debian/patches/series @@ -0,0 +1 @@ +TransitionProbability.patch -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/libpal-java.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
