Author: tille Date: 2016-06-20 19:48:09 +0000 (Mon, 20 Jun 2016) New Revision: 22141
Modified: trunk/packages/snpeff/trunk/debian/changelog trunk/packages/snpeff/trunk/debian/control trunk/packages/snpeff/trunk/debian/copyright trunk/packages/snpeff/trunk/debian/watch Log: Source is actually at Github, we need to strip several files (probably more); Vcs will be moved to Git Modified: trunk/packages/snpeff/trunk/debian/changelog =================================================================== --- trunk/packages/snpeff/trunk/debian/changelog 2016-06-20 15:01:19 UTC (rev 22140) +++ trunk/packages/snpeff/trunk/debian/changelog 2016-06-20 19:48:09 UTC (rev 22141) @@ -1,4 +1,4 @@ -snpeff (4.3-1) UNRELEASED; urgency=low +snpeff (4.2+dfsg-1) UNRELEASED; urgency=low * Initial release (Closes: #<bug>) Modified: trunk/packages/snpeff/trunk/debian/control =================================================================== --- trunk/packages/snpeff/trunk/debian/control 2016-06-20 15:01:19 UTC (rev 22140) +++ trunk/packages/snpeff/trunk/debian/control 2016-06-20 19:48:09 UTC (rev 22141) @@ -1,18 +1,19 @@ Source: snpeff +Maintainer: Debian Med Packaging Team <[email protected]> +Uploaders: Andreas Tille <[email protected]> Section: science Priority: optional -Maintainer: Debian Med Packaging Team <[email protected]> -Uploaders: Andreas Tille <[email protected]> Build-Depends: debhelper (>= 9) -Standards-Version: 3.9.4 +Standards-Version: 3.9.8 +Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/snpeff.git +Vcs-Git: https://anonscm.debian.org/git/debian-med/snpeff.git Homepage: http://snpeff.sourceforge.net/ -Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/snpeff/trunk/ -Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/snpeff/trunk/ Package: snpeff Architecture: any -Depends: ${shlibs:Depends}, ${misc:Depends} -Description: annotation and effect prediction tool for genome sequences +Depends: ${shlibs:Depends}, + ${misc:Depends} +Description: genetic variant annotation and effect prediction toolbox SnpEff is a variant annotation and effect prediction tool. It annotates and predicts the effects of variants on genes (such as amino acid changes). Modified: trunk/packages/snpeff/trunk/debian/copyright =================================================================== --- trunk/packages/snpeff/trunk/debian/copyright 2016-06-20 15:01:19 UTC (rev 22140) +++ trunk/packages/snpeff/trunk/debian/copyright 2016-06-20 19:48:09 UTC (rev 22141) @@ -1,10 +1,16 @@ Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: snpEff Upstream-Contact: Pablo Cingolani <[email protected]> -Source: https://snpeff.svn.sourceforge.net/svnroot/snpeff/SnpEffect/trunk/ +Source: https://github.com/pcingola/SnpEff/releases +Files-Excluded: */config/OLD + */doc/*.pdf + */doc/hgvs + *.jar + */papers/*.pdf + */scripts_build/OLD Files: * -Copyright: © 2008-2012, Pablo Cingolani <[email protected]> +Copyright: © 2008-2016, Pablo Cingolani <[email protected]> License: LGPLv3 Files: debian/* Modified: trunk/packages/snpeff/trunk/debian/watch =================================================================== --- trunk/packages/snpeff/trunk/debian/watch 2016-06-20 15:01:19 UTC (rev 22140) +++ trunk/packages/snpeff/trunk/debian/watch 2016-06-20 19:48:09 UTC (rev 22141) @@ -1,4 +1,8 @@ version=3 -opts="uversionmangle=s/_/./g" \ - http://sf.net/snpeff/snpEff_v(\d[\d_.]+)_core\.(?:tgz|tbz|txz|zip|(?:tar\.(?:gz|bz2|xz))) +opts="repacksuffix=+dfsg,dversionmangle=s/\+dfsg//g,repack,compression=xz" \ + https://github.com/pcingola/SnpEff/releases .*/archive/v(\d[\d.-]+)\.(?:tar(?:\.gz|\.bz2)?|tgz) + +# That's the binary jar download +#opts="uversionmangle=s/_/./g" \ +# http://sf.net/snpeff/snpEff_v(\d[\d_.]+)_core\.(?:tgz|tbz|txz|zip|(?:tar\.(?:gz|bz2|xz))) _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
