Author: tille Date: 2016-10-27 12:42:21 +0000 (Thu, 27 Oct 2016) New Revision: 22942
Modified: trunk/packages/R/r-bioc-variantannotation/trunk/debian/changelog trunk/packages/R/r-bioc-variantannotation/trunk/debian/control trunk/packages/R/r-bioc-variantannotation/trunk/debian/copyright trunk/packages/R/r-bioc-variantannotation/trunk/debian/patches/use_debian_packaged_zlib.patch trunk/packages/R/r-bioc-variantannotation/trunk/debian/rules Log: * New upstream version * Convert to dh-r * Generic BioConductor homepage Modified: trunk/packages/R/r-bioc-variantannotation/trunk/debian/changelog =================================================================== --- trunk/packages/R/r-bioc-variantannotation/trunk/debian/changelog 2016-10-27 12:38:39 UTC (rev 22941) +++ trunk/packages/R/r-bioc-variantannotation/trunk/debian/changelog 2016-10-27 12:42:21 UTC (rev 22942) @@ -1,3 +1,11 @@ +r-bioc-variantannotation (1.20.0-1) unstable; urgency=medium + + * New upstream version + * Convert to dh-r + * Generic BioConductor homepage + + -- Andreas Tille <[email protected]> Thu, 27 Oct 2016 14:21:13 +0200 + r-bioc-variantannotation (1.18.0-1) unstable; urgency=medium * New upstream version Modified: trunk/packages/R/r-bioc-variantannotation/trunk/debian/control =================================================================== --- trunk/packages/R/r-bioc-variantannotation/trunk/debian/control 2016-10-27 12:38:39 UTC (rev 22941) +++ trunk/packages/R/r-bioc-variantannotation/trunk/debian/control 2016-10-27 12:42:21 UTC (rev 22942) @@ -4,23 +4,22 @@ Section: gnu-r Priority: optional Build-Depends: debhelper (>= 9), - cdbs, + dh-r, r-base-dev, r-bioc-genomicfeatures (>= 1.22.1), r-bioc-bsgenome (>= 1.38.0) Standards-Version: 3.9.8 Vcs-Browser: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-variantannotation/trunk/ Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-variantannotation/trunk/ -Homepage: http://bioconductor.org/packages/release/bioc/html/VariantAnnotation.html +Homepage: https://bioconductor.org/packages/VariantAnnotation/ Package: r-bioc-variantannotation Architecture: any Depends: ${R:Depends}, ${misc:Depends}, ${shlibs:Depends}, - r-bioc-genomicfeatures (>= 1.22.0), - r-bioc-bsgenome (>= 1.38.0) -Suggests: r-bioc-snpstats +Recommends: ${R:Recommends} +Suggests: ${R:Suggests} Description: BioConductor annotation of genetic variants This BioConductor package provides R functions to annotate variants, compute amino acid coding changess and to predict coding outcomes. Modified: trunk/packages/R/r-bioc-variantannotation/trunk/debian/copyright =================================================================== --- trunk/packages/R/r-bioc-variantannotation/trunk/debian/copyright 2016-10-27 12:38:39 UTC (rev 22941) +++ trunk/packages/R/r-bioc-variantannotation/trunk/debian/copyright 2016-10-27 12:42:21 UTC (rev 22942) @@ -1,15 +1,15 @@ -Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: VariantAnnotation Upstream-Contact: Valerie Obenchain <[email protected]> -Source: http://bioconductor.org/packages/release/bioc/html/VariantAnnotation.html +Source: https://bioconductor.org/packages/VariantAnnotation/ Files: * -Copyright: © 2006-2014 Valerie Obenchain, Martin Morgan, Michael Lawrence +Copyright: © 2006-2016 Valerie Obenchain, Martin Morgan, Michael Lawrence with contributions from Stephanie Gogarten License: Artistic-2.0 Files: debian/* -Copyright: 2014 Andreas Tille <[email protected]> +Copyright: 2014-2016 Andreas Tille <[email protected]> License: Artistic-2.0 License: Artistic-2.0 Modified: trunk/packages/R/r-bioc-variantannotation/trunk/debian/patches/use_debian_packaged_zlib.patch =================================================================== --- trunk/packages/R/r-bioc-variantannotation/trunk/debian/patches/use_debian_packaged_zlib.patch 2016-10-27 12:38:39 UTC (rev 22941) +++ trunk/packages/R/r-bioc-variantannotation/trunk/debian/patches/use_debian_packaged_zlib.patch 2016-10-27 12:42:21 UTC (rev 22942) @@ -11,9 +11,9 @@ -import(zlibbioc) - - importClassesFrom(Biobase, - AssayData - ) + importFrom(stats, pchisq, setNames) + + importFrom(utils, packageVersion) --- a/DESCRIPTION +++ b/DESCRIPTION @@ -13,7 +13,7 @@ License: Artistic-2.0 Modified: trunk/packages/R/r-bioc-variantannotation/trunk/debian/rules =================================================================== --- trunk/packages/R/r-bioc-variantannotation/trunk/debian/rules 2016-10-27 12:38:39 UTC (rev 22941) +++ trunk/packages/R/r-bioc-variantannotation/trunk/debian/rules 2016-10-27 12:42:21 UTC (rev 22942) @@ -1,4 +1,4 @@ #!/usr/bin/make -f -debRreposname=bioc -include /usr/share/R/debian/r-cran.mk +%: + dh $@ --buildsystem R _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
