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tille pushed a change to branch master
in repository rambo-k.
from 809e262 Try to create jar files and notice that some non-free
Geneious code (com.biomatters.geneious.publicapi.documents.sequence) seems to
be needed :-( (Back to negotians with upstream)
new c72ba3b Upstream says using r5 instead of r8 (latest) should work
without Genious code
new 4d024e3 Use r5 from SVN which does not require Genious code
new c988c5c New upstream version 1.21+r5
new bb422b6 Merge tag 'upstream/1.21+r5'
new 08a00d9 Fix changelog
new 4b5312e Create jar file
The 6 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
RAMBO-K-plugin_eclipse/.classpath | 9 -
RAMBO-K-plugin_eclipse/.project | 17 --
.../RAMBO-K Indexer (32 bit).launch | 27 ---
.../RAMBO-K indexer (64 bit).launch | 27 ---
RAMBO-K-plugin_eclipse/RAMBO-K-Indexer.iml | 13 --
RAMBO-K-plugin_eclipse/plugin.properties | 11 --
.../org/rki/rambok/indexer/GeneiousDataReader.java | 56 ------
.../org/rki/rambok/indexer/GeneiousDataWriter.java | 73 --------
.../src/org/rki/rambok/indexer/GeneiousReader.java | 82 --------
.../src/org/rki/rambok/indexer/GeneiousWriter.java | 53 ------
.../src/org/rki/rambok/indexer/Indexer.java | 189 -------------------
.../src/org/rki/rambok/indexer/IndexerPlugin.java | 92 ---------
.../rki/rambok/indexer/RAMBOKProgressListener.java | 43 -----
.../src/org/rki/rambok/indexer/RAMBOKresult.java | 206 ---------------------
.../rambok/indexer/RAMBOKresultDocumentViewer.java | 79 --------
ReadClassifier_eclipse/.classpath | 1 -
.../src/org/rki/readclassifier/AbstractWriter.java | 7 -
.../src/org/rki/readclassifier/Classifier.java | 2 +-
.../readclassifier/ClassifierProgressListener.java | 5 -
.../org/rki/readclassifier/ClassifierThread.java | 41 ++--
.../src/org/rki/readclassifier/MMClassifier.java | 38 ----
.../src/org/rki/readclassifier/Read.java | 19 +-
.../src/org/rki/readclassifier/Reader.java | 6 +-
.../src/org/rki/readclassifier/Writer.java | 2 +-
.../src/org/rki/readtrainer/AbstractReader.java | 9 -
.../src/org/rki/readtrainer/Trainer.java | 2 +-
.../rki/readtrainer/TrainerProgressListener.java | 5 -
.../src/org/rki/readtrainer/TrainerThread.java | 9 +-
debian/changelog | 4 +-
debian/get-orig-source | 29 ++-
debian/rules | 19 +-
31 files changed, 50 insertions(+), 1125 deletions(-)
delete mode 100644 RAMBO-K-plugin_eclipse/.classpath
delete mode 100644 RAMBO-K-plugin_eclipse/.project
delete mode 100644 RAMBO-K-plugin_eclipse/RAMBO-K Indexer (32 bit).launch
delete mode 100644 RAMBO-K-plugin_eclipse/RAMBO-K indexer (64 bit).launch
delete mode 100644 RAMBO-K-plugin_eclipse/RAMBO-K-Indexer.iml
delete mode 100644 RAMBO-K-plugin_eclipse/plugin.properties
delete mode 100644
RAMBO-K-plugin_eclipse/src/org/rki/rambok/indexer/GeneiousDataReader.java
delete mode 100644
RAMBO-K-plugin_eclipse/src/org/rki/rambok/indexer/GeneiousDataWriter.java
delete mode 100644
RAMBO-K-plugin_eclipse/src/org/rki/rambok/indexer/GeneiousReader.java
delete mode 100644
RAMBO-K-plugin_eclipse/src/org/rki/rambok/indexer/GeneiousWriter.java
delete mode 100644
RAMBO-K-plugin_eclipse/src/org/rki/rambok/indexer/Indexer.java
delete mode 100644
RAMBO-K-plugin_eclipse/src/org/rki/rambok/indexer/IndexerPlugin.java
delete mode 100644
RAMBO-K-plugin_eclipse/src/org/rki/rambok/indexer/RAMBOKProgressListener.java
delete mode 100644
RAMBO-K-plugin_eclipse/src/org/rki/rambok/indexer/RAMBOKresult.java
delete mode 100644
RAMBO-K-plugin_eclipse/src/org/rki/rambok/indexer/RAMBOKresultDocumentViewer.java
delete mode 100644
ReadClassifier_eclipse/src/org/rki/readclassifier/AbstractWriter.java
delete mode 100644
ReadClassifier_eclipse/src/org/rki/readclassifier/ClassifierProgressListener.java
delete mode 100644
ReadTrainer_eclipse/src/org/rki/readtrainer/AbstractReader.java
delete mode 100644
ReadTrainer_eclipse/src/org/rki/readtrainer/TrainerProgressListener.java
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