This is an automated email from the git hooks/post-receive script.
tille pushed a change to branch upstream
in repository beast2-mcmc.
from 37327ec Imported Upstream version 2.4.3+dfsg
new ef83e24 Imported Upstream version 2.4.4+dfsg
The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
build.xml | 4 +-
release/common/README.txt | 4 +-
release/common/VERSION HISTORY.txt | 15 +-
src/beast/app/BEASTVersion.java | 2 +-
src/beast/app/BEASTVersion2.java | 2 +-
src/beast/app/beastapp/BeastLauncher.java | 2 +-
src/beast/app/beauti/AlignmentListInputEditor.java | 50 +----
src/beast/app/beauti/BeautiAlignmentProvider.java | 4 +
src/beast/app/beauti/BeautiConfig.java | 7 +-
src/beast/app/beauti/BeautiDoc.java | 77 +++++---
src/beast/app/beauti/GuessPatternDialog.java | 52 ++++--
src/beast/app/beauti/MRCAPriorInputEditor.java | 3 +
src/beast/app/treeannotator/TreeAnnotator.java | 201 ++++++++++++---------
src/beast/app/treeannotator/TreeSetParser.java | 3 +-
src/beast/app/util/Utils6.java | 12 +-
src/beast/evolution/operators/NodeReheight.java | 2 +-
src/beast/evolution/tree/Tree.java | 56 +++---
.../evolution/tree/TreeWithMetaDataLogger.java | 36 ++--
src/beast/util/AddOnManager.java | 116 ++++++------
src/beast/util/NexusParser.java | 32 ++--
src/beast/util/TreeParser.java | 34 ++--
src/beast/util/treeparser/Newick.g4 | 5 +-
src/beast/util/treeparser/NewickBaseVisitor.java | 2 +-
src/beast/util/treeparser/NewickLexer.java | 92 ++++++----
src/beast/util/treeparser/NewickParser.java | 27 +--
src/beast/util/treeparser/NewickVisitor.java | 2 +-
.../evolution/alignment/FilteredAlignmentTest.java | 68 ++++++-
src/test/beast/util/TreeParserTest.java | 14 ++
version.xml | 2 +-
29 files changed, 550 insertions(+), 376 deletions(-)
--
Alioth's /usr/local/bin/git-commit-notice on
/srv/git.debian.org/git/debian-med/beast2-mcmc.git
_______________________________________________
debian-med-commit mailing list
[email protected]
http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
