This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository hisat2.
commit 885cc2482d32e3e46b7c709ca3076ccf02fc56cf Merge: 40902b2 b84b3bc Author: Andreas Tille <[email protected]> Date: Fri Dec 9 13:44:30 2016 +0100 Merge tag 'upstream/2.0.5' Upstream version 2.0.5 MANUAL | 86 +- MANUAL.markdown | 129 +- VERSION | 2 +- aligner_seed_policy.cpp | 2 +- aln_sink.h | 8 +- doc/manual.inc.html | 94 +- gfm.h | 12 +- gp.h | 65 + hi_aligner.h | 483 ++- hisat2.cpp | 146 +- hisat2_build_genotype_genome.py | 89 +- hisat2_inspect.cpp | 3 +- hisat2_test_HLA_genotyping.py | 3547 ++++++++++++++------ hisat_bp.cpp | 4 +- ...ct_HLA_vars.py => hisatgenotype_extract_vars.py | 587 +++- hisatgenotype_typing.py | 1688 ++++++++++ ...otyping.py => old_hisat2_test_HLA_genotyping.py | 83 +- opts.h | 3 + pat.cpp | 16 + ref_read.cpp | 14 + sam.h | 2 +- spliced_aligner.h | 324 +- tp.h | 69 +- 23 files changed, 5519 insertions(+), 1937 deletions(-) -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/hisat2.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
