Author: tille Date: 2017-01-03 16:19:04 +0000 (Tue, 03 Jan 2017) New Revision: 23492
Added: trunk/packages/plato/trunk/debian/upstream/ trunk/packages/plato/trunk/debian/upstream/metadata Removed: trunk/packages/plato/trunk/debian/README.Debian trunk/packages/plato/trunk/debian/README.source Modified: trunk/packages/plato/trunk/debian/compat trunk/packages/plato/trunk/debian/control trunk/packages/plato/trunk/debian/copyright trunk/packages/plato/trunk/debian/rules trunk/packages/plato/trunk/debian/watch Log: Normalise packaging, add citation Deleted: trunk/packages/plato/trunk/debian/README.Debian =================================================================== --- trunk/packages/plato/trunk/debian/README.Debian 2017-01-03 15:51:27 UTC (rev 23491) +++ trunk/packages/plato/trunk/debian/README.Debian 2017-01-03 16:19:04 UTC (rev 23492) @@ -1,6 +0,0 @@ -plato for Debian ----------------- - -<possible notes regarding this package - if none, delete this file> - - -- Steffen Moeller <[email protected]> Wed, 14 Sep 2011 14:47:35 +0200 Deleted: trunk/packages/plato/trunk/debian/README.source =================================================================== --- trunk/packages/plato/trunk/debian/README.source 2017-01-03 15:51:27 UTC (rev 23491) +++ trunk/packages/plato/trunk/debian/README.source 2017-01-03 16:19:04 UTC (rev 23492) @@ -1,9 +0,0 @@ -plato for Debian ----------------- - -<this file describes information about the source package, see Debian policy -manual section 4.14. You WILL either need to modify or delete this file> - - - - Modified: trunk/packages/plato/trunk/debian/compat =================================================================== --- trunk/packages/plato/trunk/debian/compat 2017-01-03 15:51:27 UTC (rev 23491) +++ trunk/packages/plato/trunk/debian/compat 2017-01-03 16:19:04 UTC (rev 23492) @@ -1 +1 @@ -8 +10 Modified: trunk/packages/plato/trunk/debian/control =================================================================== --- trunk/packages/plato/trunk/debian/control 2017-01-03 15:51:27 UTC (rev 23491) +++ trunk/packages/plato/trunk/debian/control 2017-01-03 16:19:04 UTC (rev 23492) @@ -1,19 +1,19 @@ Source: plato -Section: science -Priority: extra Maintainer: Debian Med Packaging Team <[email protected]> -DM-Upload-Allowed: yes Uploaders: Steffen Moeller <[email protected]> -Build-Depends: debhelper (>= 8.0.0), - libboost-dev -Standards-Version: 3.9.2 -Homepage: https://chgr.mc.vanderbilt.edu/plato -Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/plato/trunk/ -Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/plato/trunk +Section: science +Priority: optional +Build-Depends: debhelper (>= 10), + libboost-dev +Standards-Version: 3.9.8 +Vcs-Browser: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/plato/trunk +Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/plato/trunk/ +Homepage: https://ritchielab.psu.edu/plato Package: plato Architecture: any -Depends: ${shlibs:Depends}, ${misc:Depends} +Depends: ${shlibs:Depends}, + ${misc:Depends} Description: Analysis, translation, and organization of large-scale genetic data PLATO is an acronym for "PLatform for the Analysis, Translation, and Organization of large-scale data". Recent technological advances @@ -55,7 +55,8 @@ Package: plato-dbg Architecture: any -Depends: ${misc:Depends}, plato (= ${binary:Version}) +Depends: ${misc:Depends}, + plato (= ${binary:Version}) Description: debug information for plato plato is dominate by a single binary. This package adds debug symbols to it. Modified: trunk/packages/plato/trunk/debian/copyright =================================================================== --- trunk/packages/plato/trunk/debian/copyright 2017-01-03 15:51:27 UTC (rev 23491) +++ trunk/packages/plato/trunk/debian/copyright 2017-01-03 16:19:04 UTC (rev 23492) @@ -1,15 +1,16 @@ -Format: http://dep.debian.net/deps/dep5 +Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: plato -Source: <url://example.com> +Source: https://ritchielab.psu.edu/plato Files: * -Copyright: <years> <put author's name and email here> - <years> <likewise for another author> +Copyright: 2008-2016 Marylyn Ritchie and others License: GPL-2+ Files: debian/* Copyright: 2011 Steffen Moeller <[email protected]> License: GPL-2+ + +License: GPL-2+ This package is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or @@ -20,11 +21,5 @@ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. . - You should have received a copy of the GNU General Public License - along with this program. If not, see <http://www.gnu.org/licenses/> - . On Debian systems, the complete text of the GNU General Public License version 2 can be found in "/usr/share/common-licenses/GPL-2". - -# Please also look if there are files or directories which have a -# different copyright/license attached and list them here. Modified: trunk/packages/plato/trunk/debian/rules =================================================================== --- trunk/packages/plato/trunk/debian/rules 2017-01-03 15:51:27 UTC (rev 23491) +++ trunk/packages/plato/trunk/debian/rules 2017-01-03 16:19:04 UTC (rev 23492) @@ -1,5 +1,4 @@ #!/usr/bin/make -f -# -*- makefile -*- # Uncomment this to turn on verbose mode. export DH_VERBOSE=1 @@ -7,19 +6,8 @@ %: dh $@ - override_dh_auto_test: # do not test, missing cdblib.h -override_dh_strip: - dh_strip --dbg-package plato-dbg - -VERSION=1.1 get-orig-source: - [ -r ../plato-$(VERSION).tar.gz ] || wget -O ../plato-$(VERSION).tar.gz http://chgr.mc.vanderbilt.edu/ritchielab/software/builds/plato/plato-release$(VERSION).tar.gz - cd .. && tar xzf plato-$(VERSION).tar.gz - cd .. && mv plato-release plato-$(VERSION) - cd ../plato-$(VERSION) && make clean - find ../plato-$(VERSION) -name "*.cpp" -o -name "*.h" | xargs -r chmod -x - find ../plato-$(VERSION) -name "*.svn" -a -type d | xargs -r rm -rf - cd .. && tar cjf plato_$(VERSION).orig.tar.bz2 plato-$(VERSION) + echo "Download latest version from https://ritchielab.psu.edu/plato"; Added: trunk/packages/plato/trunk/debian/upstream/metadata =================================================================== --- trunk/packages/plato/trunk/debian/upstream/metadata (rev 0) +++ trunk/packages/plato/trunk/debian/upstream/metadata 2017-01-03 16:19:04 UTC (rev 23492) @@ -0,0 +1,10 @@ +Reference: + Author: "Benjamin J. Grady and Eric Torstenson and Scott M. Dudek and Justin Giles and David Sexton and Marylyn D. Ritchie" + Title: "Finding unique filter sets in PLATO: a precursor to efficient interaction analysis in GWAS data" + Journal: Proceedings of the Pacific Symposium + Year: 2010 + Pages: 315-26 + DOI: 10.1142/9789814295291_0034 + PMID: 19908384 + URL: http://www.worldscientific.com/doi/abs/10.1142/9789814295291_0034 + eprint: http://www.worldscientific.com/doi/pdf/10.1142/9789814295291_0034 Modified: trunk/packages/plato/trunk/debian/watch =================================================================== --- trunk/packages/plato/trunk/debian/watch 2017-01-03 15:51:27 UTC (rev 23491) +++ trunk/packages/plato/trunk/debian/watch 2017-01-03 16:19:04 UTC (rev 23492) @@ -1,2 +1,6 @@ -version=3 -http://chgr.mc.vanderbilt.edu/ritchielab/software/builds/plato/plato-release([0-9.]+)\.tar\.gz +# FIXME: Session handling prevents download of the real tar archive. +# May be [email protected] could be of any help + +version=4 + +https://ritchielab.psu.edu/plato .*session.php.*file=plato-(\d[.\d]+)\.tar\.gz _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
