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tille pushed a change to branch upstream
in repository r-bioc-edger.
from 3b301b7 Imported Upstream version 3.16.1+dfsg
new 104c7f6 New upstream version 3.16.5+dfsg
The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
DESCRIPTION | 6 +++---
R/addPriorCount.R | 2 ++
R/cpm.R | 2 +-
R/dispBinTrend.R | 7 ++++---
R/estimateGLMCommonDisp.R | 2 +-
R/geneset-DGEList.R | 26 +++++++++++++-------------
R/glmTreat.R | 3 ++-
R/plotMDS.DGEList.R | 11 +++++++----
R/scaleOffset.R | 37 +++++++++++++++++++++++++++++++++++++
build/vignette.rds | Bin 229 -> 228 bytes
inst/doc/edgeR.pdf | Bin 45765 -> 45765 bytes
man/camera.DGEList.Rd | 17 ++++++++++++-----
man/plotMDS.DGEList.Rd | 8 ++++----
man/roast.DGEList.Rd | 32 ++++++++++++++++++++++++++------
man/scaleOffset.Rd | 35 +++++++++++++++++++++++++++++++++++
src/R_calculate_cpm.cpp | 3 ++-
src/add_prior.cpp | 2 --
17 files changed, 149 insertions(+), 44 deletions(-)
create mode 100644 R/scaleOffset.R
create mode 100644 man/scaleOffset.Rd
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