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tille pushed a change to branch upstream
in repository giira.
from a315672 Imported Upstream version 0.0.20140210
new 54ea890 New upstream version 0.0.20140625
The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
src/geneFinder/ExtractGeneCandidates.java | 3 +
src/geneFinder/FrameSearch.java | 236 ++++++++++++++++++++++++
src/geneFinder/GeneFinder.java | 10 +-
src/geneFinder/Giira.java | 5 +-
src/geneFinder/ProkaryoteExtraction.java | 3 +
src/geneFinder/Prokaryote_Specials.java | 211 +++++++++++++++++++++
src/geneFinder/ReadInParameters_GeneFinder.java | 88 ++++++++-
src/geneFinder/SamParser.java | 76 ++++++--
src/types/Rna.java | 2 +-
9 files changed, 612 insertions(+), 22 deletions(-)
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