This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository last-align.
commit ac6561a02c5b505825513a3ae770fed41369b199 Merge: c5c9c98 28865eb Author: Andreas Tille <[email protected]> Date: Mon Jan 9 14:16:09 2017 +0100 Merge tag 'upstream/828' Upstream version 828 ChangeLog.txt | 109 +++++++++- doc/last-split.html | 28 ++- doc/last-split.txt | 25 ++- doc/last-tuning.html | 11 + doc/last-tuning.txt | 13 ++ doc/lastal.html | 5 + doc/lastal.txt | 7 + doc/lastdb.html | 42 +++- doc/lastdb.txt | 41 +++- makefile | 7 +- src/Centroid.cc | 438 +++++++++++++++++++++++---------------- src/Centroid.hh | 31 +-- src/DiagonalTable.hh | 9 +- src/GappedXdropAligner.cc | 21 +- src/GappedXdropAligner2qual.cc | 21 +- src/GappedXdropAlignerInl.hh | 7 + src/GappedXdropAlignerPssm.cc | 21 +- src/GeneralizedAffineGapCosts.cc | 1 - src/GeneralizedAffineGapCosts.hh | 7 +- src/LastalArguments.cc | 2 +- src/LastalArguments.hh | 20 +- src/LastdbArguments.cc | 2 +- src/LastdbArguments.hh | 12 +- src/MultiSequence.cc | 5 +- src/MultiSequence.hh | 2 +- src/SegmentPair.hh | 4 +- src/SegmentPairPot.cc | 2 +- src/SegmentPairPot.hh | 2 +- src/SubsetSuffixArray.cc | 13 +- src/SubsetSuffixArray.hh | 16 +- src/SubsetSuffixArraySearch.cc | 18 +- src/SubsetSuffixArraySort.cc | 9 +- src/lastal.cc | 34 +-- src/lastdb.cc | 3 +- src/makefile | 204 ++++++++++-------- src/split/cbrc_split_aligner.cc | 38 ++-- src/split/cbrc_split_aligner.hh | 9 +- src/split/last-split.cc | 31 +-- src/version.hh | 2 +- 39 files changed, 820 insertions(+), 452 deletions(-) -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/last-align.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
